PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022943239.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

HD-ZIP

Protein Properties

Length: 272aa MW: 30202.3 Da PI: 8.7652

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022943239.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.1	3e-18	124	178	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q Lee F++n++++ ++++ LA++l+L rqV vWFqNrRa+ k XP_022943239.1 124 RKKLRLSKQQSALLEESFKQNSTLNPKQKQTLARHLNLRPRQVEVWFQNRRARTK 178 778899***********************************************98 PP
2	HD-ZIP_I/II	121.9	3.1e-39	124	213	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlsk+q++lLEesF+++++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eL+ +l XP_022943239.1 124 RKKLRLSKQQSALLEESFKQNSTLNPKQKQTLARHLNLRPRQVEVWFQNRRARTKMKQTEVDCEFLKKCCETLTNENRRLQKELQELK-AL 213 69*************************************************************************************9.55 PP

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence
MGLDDVSQTS LVLGLGISEA ASPIINNLKN NKKKNNNKNP TSLEFEPCAL TLGFSGDVDP 60 PPHHPHHHHL YRQASPHSSA VCSSFSGGGG GGIKRERDLS SEEVELERVC CRVSDEDEDG 120 CNTRKKLRLS KQQSALLEES FKQNSTLNPK QKQTLARHLN LRPRQVEVWF QNRRARTKMK 180 QTEVDCEFLK KCCETLTNEN RRLQKELQEL KALKLAHPLY MHMPAATLTM CPSCERVGGV 240 GVGVGDGASK PKFSMAPKPH FYNPFSNPSA AC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	123	129	TRKKLRL
2	173	181	RRARTKMKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	1e-72	HD-ZIP family protein