PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022943473.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

MYB_related

Protein Properties

Length: 606aa MW: 68885.5 Da PI: 10.34

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022943473.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30.8	6.6e-10	10	63	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqkyl 48 ++W t Ed+ll+ av+++G+ +W+++a ++ +t+ +c+s++++++ XP_022943473.1 10 KPWGTLEDLLLASAVNRHGTASWDSVAMELHnrcsqspSSLTPQDCRSKFYDLK 63 58**********************************99********9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 606 aa Download sequence
MFKQRQTNPK PWGTLEDLLL ASAVNRHGTA SWDSVAMELH NRCSQSPSSL TPQDCRSKFY 60 DLKRRFLSQN LHDSDSSSLL PMLDELRKIR VEELRRDVQR RDVLIVSLEM KVKRLEEERD 120 PSFHEPHGGP DPDADADAAK TNLRPLNPAA SEDDSDNRKN IRSPNESNST SKKYDVRQNG 180 VVEENPIPES VKISKITGTG PPRTGDKPGR EWSFNGAAAE PEPEREKNWV AGGGYKERNW 240 RSSRRSQTAV GDSNEAWESV SESKQEGRDG AVSKQQSSDV QSSGSLSQRK RCRNSSGEEP 300 EVSPAKPKPK PNPSAVKSEA LLKFLEIIRS HRLGSAFERR VRSQESDRYK NLIRQHIDLR 360 TIRARVVKGA YADSFHPFFR DLLLLFNNAI IFFHTTSPEN DAAVKLRALV LEEMNDKARK 420 PQPTKPCTTA MVGCRKSDSV AAVWDVGGKK AEKSSREIKG KSEVGDCVEI KIYEKGRWKK 480 GLNGRKKNGE VKHEYGGNEL SSHDGMEVGM EKKERVRKKK MKKKKKKKQG AVRFLKRMRQ 540 NCSESLEEEE EEEEEEEDEE ERKKEGIKRE KVRGKRGVGR PAKKGERVKV KREEVSGGKP 600 RKRSRR

Sequence ? help Back to Top

Protein Sequence Length: 606 aa Download sequence

MFKQRQTNPK PWGTLEDLLL ASAVNRHGTA SWDSVAMELH NRCSQSPSSL TPQDCRSKFY  60
DLKRRFLSQN LHDSDSSSLL PMLDELRKIR VEELRRDVQR RDVLIVSLEM KVKRLEEERD  120
PSFHEPHGGP DPDADADAAK TNLRPLNPAA SEDDSDNRKN IRSPNESNST SKKYDVRQNG  180
VVEENPIPES VKISKITGTG PPRTGDKPGR EWSFNGAAAE PEPEREKNWV AGGGYKERNW  240
RSSRRSQTAV GDSNEAWESV SESKQEGRDG AVSKQQSSDV QSSGSLSQRK RCRNSSGEEP  300
EVSPAKPKPK PNPSAVKSEA LLKFLEIIRS HRLGSAFERR VRSQESDRYK NLIRQHIDLR  360
TIRARVVKGA YADSFHPFFR DLLLLFNNAI IFFHTTSPEN DAAVKLRALV LEEMNDKARK  420
PQPTKPCTTA MVGCRKSDSV AAVWDVGGKK AEKSSREIKG KSEVGDCVEI KIYEKGRWKK  480
GLNGRKKNGE VKHEYGGNEL SSHDGMEVGM EKKERVRKKK MKKKKKKKQG AVRFLKRMRQ  540
NCSESLEEEE EEEEEEEDEE ERKKEGIKRE KVRGKRGVGR PAKKGERVKV KREEVSGGKP  600
RKRSRR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	475	487	KGRWKKGLNGRKK
2	517	528	RKKKMKKKKKKK
3	519	527	KKMKKKKKK
4	522	528	KKKKKKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60110.1	2e-24	MYB_related family protein