PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022943597.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

ARF

Protein Properties

Length: 676aa MW: 74383.4 Da PI: 8.6302

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022943597.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	75.6	5.5e-24	112	213	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+lt+sd+++ g +++p+ +ae++ ++ + t++ +d +g++W++++iyr++++r++lt+GW++Fv++++L +gD++vF + ++ XP_022943597.1 112 FAKTLTQSDANNGGGFSVPRYCAETIfprldytADPPVQ--TVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFLR--SK 202 89**************************997556555..8********************************************4..47 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++ l+v+++r+ XP_022943597.1 203 NGDLCVGIRRA 213 8888**996 PP
2	Auxin_resp	114.5	9.6e-38	282	365	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 aa a+++++FevvY+Prast+eF+vk+++v++a++++++ GmRfkm fetedss++++ +Gt ++v+ +dp+rWpnS+Wr+L+ XP_022943597.1 282 AAALAASGQPFEVVYYPRASTPEFCVKASSVRAAMRIQWCSGMRFKMPFETEDSSRISWfMGTTSSVQVADPIRWPNSPWRLLQ 365 678899****************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 676 aa Download sequence
MKEAEKSLDP QLWHACAGGM VQMPAINSKV FYFPQGHAEH AQATVDFTSS LRIPPLILCR 60 VLAVKFLADP ETDEVFANVS LVPLANNDLN FEEEGGFGGN GSDNNMEKPA SFAKTLTQSD 120 ANNGGGFSVP RYCAETIFPR LDYTADPPVQ TVIAKDVHGE VWKFRHIYRG TPRRHLLTTG 180 WSSFVNQKKL VAGDSIVFLR SKNGDLCVGI RRAKRAIGCA VDHPYGWNPG GGNCFPPCGG 240 LTMFLRDEDN NKLSRKGSVS SSGGGGNLRG KSKIRPESVI EAAALAASGQ PFEVVYYPRA 300 STPEFCVKAS SVRAAMRIQW CSGMRFKMPF ETEDSSRISW FMGTTSSVQV ADPIRWPNSP 360 WRLLQVTWDE PDLLQNVKRV SPWLVELVSN MPVIQLSPFS SPRKKFRLPQ HPDVPLDSQF 420 PLSSSSSSFS SNTLRPSSPM CCLSDNTSVG IQGARHTHFG ISLSDFHLNN KLQLGLVPSS 480 FQQLHFHSRF SNTDHTRSSS ALLNGEKTGP KLERSDSVKK KHQFVLFGQP ILTEQQICCS 540 SSSDIHQVSP NKSDTKLGLD IGHCKVFMES EDVGRTLNLS VIGSYEELYR RLANMFGMEK 600 PDILSHVLYQ DATGAVKQAG DKPFSDFIKT ARRLTILTDE SGSNKMGRRT LMDGVLSGEN 660 ARLDASNKTG PLSILA

Sequence ? help Back to Top

Protein Sequence Length: 676 aa Download sequence

MKEAEKSLDP QLWHACAGGM VQMPAINSKV FYFPQGHAEH AQATVDFTSS LRIPPLILCR  60
VLAVKFLADP ETDEVFANVS LVPLANNDLN FEEEGGFGGN GSDNNMEKPA SFAKTLTQSD  120
ANNGGGFSVP RYCAETIFPR LDYTADPPVQ TVIAKDVHGE VWKFRHIYRG TPRRHLLTTG  180
WSSFVNQKKL VAGDSIVFLR SKNGDLCVGI RRAKRAIGCA VDHPYGWNPG GGNCFPPCGG  240
LTMFLRDEDN NKLSRKGSVS SSGGGGNLRG KSKIRPESVI EAAALAASGQ PFEVVYYPRA  300
STPEFCVKAS SVRAAMRIQW CSGMRFKMPF ETEDSSRISW FMGTTSSVQV ADPIRWPNSP  360
WRLLQVTWDE PDLLQNVKRV SPWLVELVSN MPVIQLSPFS SPRKKFRLPQ HPDVPLDSQF  420
PLSSSSSSFS SNTLRPSSPM CCLSDNTSVG IQGARHTHFG ISLSDFHLNN KLQLGLVPSS  480
FQQLHFHSRF SNTDHTRSSS ALLNGEKTGP KLERSDSVKK KHQFVLFGQP ILTEQQICCS  540
SSSDIHQVSP NKSDTKLGLD IGHCKVFMES EDVGRTLNLS VIGSYEELYR RLANMFGMEK  600
PDILSHVLYQ DATGAVKQAG DKPFSDFIKT ARRLTILTDE SGSNKMGRRT LMDGVLSGEN  660
ARLDASNKTG PLSILA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28350.1	0.0	ARF family protein