PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022943627.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

MIKC_MADS

Protein Properties

Length: 212aa MW: 24288.6 Da PI: 9.4012

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022943627.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	87.9	5.4e-28	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien + rqvtfskRrng+lKKA+ELSvLC+aeva+iifss gkl e++s XP_022943627.1 10 RIENATSRQVTFSKRRNGLLKKAFELSVLCEAEVALIIFSSAGKLCEFAS 59 8***********************************************86 PP
2	K-box	70.3	6.1e-24	84	170	12	98
K-box 12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 ++ e+a+L keie+L+ ++R+l G++L+s s++eLqq+eqqL++sl ++R++K+e ++eqi++l++kek l en++L kk+ XP_022943627.1 84 PHHHDQADEAANLLKEIESLEVSKRKLFGQGLGSSSYEELQQIEQQLHRSLAHVRATKHEAYKEQIDQLKEKEKYLAAENEKLAKKY 170 56777889***************************************************************************9985 PP

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence
MVRGKTQMRR IENATSRQVT FSKRRNGLLK KAFELSVLCE AEVALIIFSS AGKLCEFASS 60 SMQATVERFQ RHTRETHHLE RSLPHHHDQA DEAANLLKEI ESLEVSKRKL FGQGLGSSSY 120 EELQQIEQQL HRSLAHVRAT KHEAYKEQID QLKEKEKYLA AENEKLAKKY LVQLEPRRSL 180 TQVGEVSPNL ETSSTFDVET ELFIGPPKSR SK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45660.1	9e-75	MIKC_MADS family protein