PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022943689.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family MYB
Protein Properties Length: 306aa    MW: 34441.6 Da    PI: 6.567
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022943689.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.86e-191461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +lvd+++++G g+W++ ++  g++R++k+c++rw +yl
   XP_022943689.1 14 KGPWTPEEDRILVDYIEKHGHGSWRALPNLAGLNRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding51.32.7e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++ +E+++++ +++ lG++ W+ Ia++++ gRt++++k++w+++l
   XP_022943689.1  67 RGNFSDQEEQIIISLHASLGNK-WSIIASHLP-GRTDNEIKNFWNTHL 112
                      89********************.*********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    
MSRASMLDEN GLKKGPWTPE EDRILVDYIE KHGHGSWRAL PNLAGLNRCG KSCRLRWTNY  60
LRPDIKRGNF SDQEEQIIIS LHASLGNKWS IIASHLPGRT DNEIKNFWNT HLKKKLLQMG  120
IDPVTHMPTP FDHHTNTFSN LHHLLSLSTA PWDSSSRLHT QATQLAKAHL LQNVLQILSS  180
PSSLAISNNL FNTQQITNLT YNHPIGSSFQ TFPSNIQPLQ EPLSCDDYAT TAPTLALEND  240
CNRAESFYDM SQCPNSLPDL IPASPECSKI PTAIENNWGD IMDDESSSSY WKYAINQTPP  300
PPWSVS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.29e-86MYB family protein