PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022944450.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family M-type_MADS
Protein Properties Length: 294aa    MW: 32968.7 Da    PI: 8.6957
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022944450.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.18.5e-221461249
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    + e ks +qvtfskRr+g++ KA ELSvLC+ae+a+++ s ++kly++
  XP_022944450.1 14 KLEKKSSQQVTFSKRRAGLFNKAAELSVLCGAEIAILVSSASNKLYTF 61
                    57899******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    
MKKSLGRRKI EIKKLEKKSS QQVTFSKRRA GLFNKAAELS VLCGAEIAIL VSSASNKLYT  60
FGHPNVESLL DRFLTGNSSP PKPAEAYFPL QELNRDFDDV AAEFDIEKRR AAERSSNDRF  120
WWDEPLESMK IDELKRFRSS LVELRAKVAE RVEKFTDIRT EGSPIPALQP STPPSITLVG  180
NLQPPPTTPS IDLVENLQQP PTPPSIGLFE NLQRPLTPPS IGVFENLQWP STPPSIGLYE  240
NLRWPSTPPS IDLVKSLQWS PMPSIHLAEN NQCLPSSLHI SGNHSVARRL NMLE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-28M-type_MADS family protein