PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022944555.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family MIKC_MADS
Protein Properties Length: 233aa    MW: 26765.2 Da    PI: 9.5998
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022944555.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF98.72.4e-31958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++g+lyey+
  XP_022944555.1  9 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYA 58
                    79***********************************************8 PP
2K-box107.31.8e-35781744100
           K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                     +sg s++ea+ + +qqe++kLk++i+++q+++Rh+lGe L+sLslk+L++Le +Le++++k+R+kKne l++++e +qk+e elq++n++Lr+++
  XP_022944555.1  78 NSGLSVAEANVQFYQQEASKLKRQIREIQNSNRHILGEALSSLSLKDLKSLEGRLERGISKVRAKKNETLCAEMEFMQKREMELQNHNNYLRAQI 172
                     566669****************************************************************************************9 PP

           K-box  99 ee 100
                     +e
  XP_022944555.1 173 AE 174
                     86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    
MGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFST RGRLYEYANN  60
SVRGTIERYK KAFADSSNSG LSVAEANVQF YQQEASKLKR QIREIQNSNR HILGEALSSL  120
SLKDLKSLEG RLERGISKVR AKKNETLCAE MEFMQKREME LQNHNNYLRA QIAEHERIPQ  180
QQQQQQTNMM QRGTYETVGG GQYEENRSYG GVGLMDSDTH YAHQDHLTAL QLV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58780.16e-98MIKC_MADS family protein