PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022944578.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

SRS

Protein Properties

Length: 373aa MW: 38508.3 Da PI: 7.3406

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022944578.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	212.6	9.2e-66	153	310	3	153
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaesk 97 s t++CqdCGnqakkdC+ RCRtCC+srgfdCathvkstWvpaa+rrerq ++ + ++ + +s +++ +k++r +++++s+t++s+++++ XP_022944578.1 153 SATTTCQDCGNQAKKDCSRGRCRTCCRSRGFDCATHVKSTWVPAARRRERQLMAITGTAADGSSGSASGTKKPRLI---ASQTTSHTSTSNTTPP 244 57899*******************************************99999999999999999999999986...5566677777888888 PP DUF702 98 keletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 +++tss lP +++++avf+cvrv++vddge+e+aYq++v+igGhvfkG+LydqG+e XP_022944578.1 245 GSIDTSSshqdagfkeeLPGQIRAPAVFKCVRVTAVDDGEDEYAYQAVVKIGGHVFKGFLYDQGVE 310 88888877889999999*********************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence
MWSAAAAAQR SLNYGLGSEM GMVGLRDVYV VAPAASFNPN PHHHDPNLIS DDHSLAVSNS 60 ATALGVGVGV GVIPLLTAGP CLGVEEDNLL GSRSGSRGGG IQLWQQNHQS TQHYLKKTPS 120 SSLDHHLHNA SGTNNDLIGG GIGVFGGLAS SSSATTTCQD CGNQAKKDCS RGRCRTCCRS 180 RGFDCATHVK STWVPAARRR ERQLMAITGT AADGSSGSAS GTKKPRLIAS QTTSHTSTSN 240 TTPPGSIDTS SSHQDAGFKE ELPGQIRAPA VFKCVRVTAV DDGEDEYAYQ AVVKIGGHVF 300 KGFLYDQGVE AGDGFPNVSE LNLSDGGGGS RNNRNGSSSA PFVDPSDVYN AAASGNGGAP 360 GFLGGSNYGN QIR

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence

MWSAAAAAQR SLNYGLGSEM GMVGLRDVYV VAPAASFNPN PHHHDPNLIS DDHSLAVSNS  60
ATALGVGVGV GVIPLLTAGP CLGVEEDNLL GSRSGSRGGG IQLWQQNHQS TQHYLKKTPS  120
SSLDHHLHNA SGTNNDLIGG GIGVFGGLAS SSSATTTCQD CGNQAKKDCS RGRCRTCCRS  180
RGFDCATHVK STWVPAARRR ERQLMAITGT AADGSSGSAS GTKKPRLIAS QTTSHTSTSN  240
TTPPGSIDTS SSHQDAGFKE ELPGQIRAPA VFKCVRVTAV DDGEDEYAYQ AVVKIGGHVF  300
KGFLYDQGVE AGDGFPNVSE LNLSDGGGGS RNNRNGSSSA PFVDPSDVYN AAASGNGGAP  360
GFLGGSNYGN QIR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.4	2e-61	SRS family protein