PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022944608.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

CO-like

Protein Properties

Length: 367aa MW: 40682.2 Da PI: 4.537

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022944608.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	18.9	3e-06	48	73	5	30
zf-B_box 5 kCpeHeekelqlfCedCqqllCedCl 30 C++++ ++++l C d+++ lC+ C XP_022944608.1 48 LCDKCNAHPAILRCMDDKVSLCQGCD 73 7************************6 PP
2	CCT	63	9.3e-22	311	354	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R++a++RY+eK+ktR F K+irY+sRKa+A++R+RvKGrFvk+ XP_022944608.1 311 RDKAKMRYNEKKKTRTFGKQIRYASRKARADTRKRVKGRFVKAG 354 899**************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 367 aa Download sequence
MEPQCCEFCG VEKAIVYCKS DSARLCLHCD YIVHSANSLS RRHLRSLLCD KCNAHPAILR 60 CMDDKVSLCQ GCDWSADDCS SLPQRTHLLH SYTGSPSTSE FSRICTSLLD STSCTTAFDA 120 TADWTSLTTP YVIADSIDLT DVEAPSAAEN LNDVQTCSKF ETWIADPASA SPENPSYQPD 180 FLSDDSNPPK DAETNENNDI CESLNLGDLS LHLENGEGLF DSPKDTMKFE FDAGELECLL 240 IDRNFPVTES NVPVEDTIEV HSSISVSLSN ITGESSGADY QDCGLSPAFL TETSWDPSME 300 AIGPLAKDRN RDKAKMRYNE KKKTRTFGKQ IRYASRKARA DTRKRVKGRF VKAGEAYDYD 360 PLVTRNF

Sequence ? help Back to Top

Protein Sequence Length: 367 aa Download sequence

MEPQCCEFCG VEKAIVYCKS DSARLCLHCD YIVHSANSLS RRHLRSLLCD KCNAHPAILR  60
CMDDKVSLCQ GCDWSADDCS SLPQRTHLLH SYTGSPSTSE FSRICTSLLD STSCTTAFDA  120
TADWTSLTTP YVIADSIDLT DVEAPSAAEN LNDVQTCSKF ETWIADPASA SPENPSYQPD  180
FLSDDSNPPK DAETNENNDI CESLNLGDLS LHLENGEGLF DSPKDTMKFE FDAGELECLL  240
IDRNFPVTES NVPVEDTIEV HSSISVSLSN ITGESSGADY QDCGLSPAFL TETSWDPSME  300
AIGPLAKDRN RDKAKMRYNE KKKTRTFGKQ IRYASRKARA DTRKRVKGRF VKAGEAYDYD  360
PLVTRNF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21880.1	4e-75	CO-like family protein