PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022944654.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family HD-ZIP
Protein Properties Length: 238aa    MW: 27005.3 Da    PI: 6.1484
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022944654.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.56.2e-2066119356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k+ ++++eql+ Le+ F+++ +++ +++++LAk+lgL+ rq+ vWFqNrRa++k
  XP_022944654.1  66 KKKRLSSEQLDSLEQSFQEEIKLDPDRKQKLAKELGLQPRQIAVWFQNRRARWK 119
                     45679************************************************9 PP
2HD-ZIP_I/II121.35e-3965157193
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     ekk+rls+eq+ +LE+sF+ee kL+p+rK++la+eLglqprq+avWFqnrRAR+k+kqlE+ y++Lk+++da+++e+++L++ev +L++ l+e
  XP_022944654.1  65 EKKKRLSSEQLDSLEQSFQEEIKLDPDRKQKLAKELGLQPRQIAVWFQNRRARWKAKQLEHLYDTLKQEFDAISREKHKLQEEVMKLKSMLRE 157
                     69**************************************************************************************98876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    
MEWATGSFRP FVSRAPESSF GFLYNYNLEQ YQGMDVKHSA MAGASETVLQ GLVPGMDMNS  60
YGNLEKKKRL SSEQLDSLEQ SFQEEIKLDP DRKQKLAKEL GLQPRQIAVW FQNRRARWKA  120
KQLEHLYDTL KQEFDAISRE KHKLQEEVMK LKSMLRELQT ARNQVSTVYT ELSGEETVES  180
TSVGAGCSSK PSAAAVAAAA ANQYPTPPEQ CNYVFNTEEY NPMSPTFWGT LPSSYHPQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16695KKKRLSSEQLDSLEQSFQEEIKLDPDRKQK
2114122RRARWKAKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.12e-43HD-ZIP family protein