PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022944922.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

Trihelix

Protein Properties

Length: 397aa MW: 45133.7 Da PI: 6.1203

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022944922.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	87.8	1.3e-27	125	210	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l+L+e+r++++++++++++k+plW++vs+ + +e g++rs k+Ckek++nl k+ykk+keg+ +r+ + +++++f+qlea XP_022944922.1 125 RWPRQETLTLLEIRSRLDSKFKESNQKGPLWDQVSRMLeEEYGYKRSGKKCKEKFDNLYKYYKKTKEGKTGRH--DGKHYRFFRQLEA 210 8**********************************97788************************985..5557*****85 PP

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence
MSDKYPYPDL RQLTADKPIF PATPQTLDSF FPHQTHLTRG FSPAPPPPPP PLPKFPPLQL 60 LLPDPTVLPD GLFQFGCTNT SAATGGATPS AAVSAPFYRR NKMMDSEWCP YGNDVVGGSN 120 GANSRWPRQE TLTLLEIRSR LDSKFKESNQ KGPLWDQVSR MLEEEYGYKR SGKKCKEKFD 180 NLYKYYKKTK EGKTGRHDGK HYRFFRQLEA IYGGCNDQLL SPTVVESNIY RTSAAEAGEA 240 GINNNTGDEK ALVGGTSLSF SISSDFETSS SGNYRDDDLS AIAFMMNQRR VETAREDDES 300 KGDGGQGRRW REEVEKMLDC KLSRLMEVQE NWMEKIMASV EDGEKERILK EEEWRKKEVA 360 KFDHEMNEFC ARERAWIEAR EAALMEIMKR FGGKGYD

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence

MSDKYPYPDL RQLTADKPIF PATPQTLDSF FPHQTHLTRG FSPAPPPPPP PLPKFPPLQL  60
LLPDPTVLPD GLFQFGCTNT SAATGGATPS AAVSAPFYRR NKMMDSEWCP YGNDVVGGSN  120
GANSRWPRQE TLTLLEIRSR LDSKFKESNQ KGPLWDQVSR MLEEEYGYKR SGKKCKEKFD  180
NLYKYYKKTK EGKTGRHDGK HYRFFRQLEA IYGGCNDQLL SPTVVESNIY RTSAAEAGEA  240
GINNNTGDEK ALVGGTSLSF SISSDFETSS SGNYRDDDLS AIAFMMNQRR VETAREDDES  300
KGDGGQGRRW REEVEKMLDC KLSRLMEVQE NWMEKIMASV EDGEKERILK EEEWRKKEVA  360
KFDHEMNEFC ARERAWIEAR EAALMEIMKR FGGKGYD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	169	177	KRSGKKCKE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03680.1	2e-51	Trihelix family protein