PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022945963.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family HD-ZIP
Protein Properties Length: 234aa    MW: 26944.8 Da    PI: 7.451
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022945963.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.56.1e-203891456
                    -SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    +++f++eq++ Le+ F++ +++++ +++ +LA++lgL+ rq+++WFqNrRa++k
  XP_022945963.1 38 KRRFSDEQIRSLESIFYSsDSKLDSRKKVQLAAELGLQPRQISIWFQNRRARWK 91
                    578**************98**********************************9 PP
2HD-ZIP_I/II117.48.3e-3837129293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     +krr+s+eq+++LE+ F +++ kL++++Kv+la eLglqprq+ +WFqnrRAR+k+kq+E+d+++L+++yd+l+++ ++L++e+++L ++l++
  XP_022945963.1  37 NKRRFSDEQIRSLESIFYSSDsKLDSRKKVQLAAELGLQPRQISIWFQNRRARWKSKQMENDFRSLRASYDNLASQFRTLQEENNSLLSQLQK 129
                     69***************88777********************************************************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    
MERPEYIKIQ NLEVASSQTC PTPRRKKKKK KKSNNMNKRR FSDEQIRSLE SIFYSSDSKL  60
DSRKKVQLAA ELGLQPRQIS IWFQNRRARW KSKQMENDFR SLRASYDNLA SQFRTLQEEN  120
NSLLSQLQKL GELVQEEPGE GCYSTNFGKN ADENQAKLEI LEDEPEQNGV TYLNNNSKTE  180
NGGGHQATHL LEGRSNGNSH SEEQVWCDFE SDGGVIFEYQ PCSSLHLQGL SFWG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12430RRKKKKK
22432RRKKKKKKK
32440RRKKKKKKKSNNMNKRR
42531RRKKKKK
52541RRKKKKKKKSNNMNKRR
62632RRKKKKK
72642RRKKKKKKKSNNMNKRR
88694RRARWKSKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.11e-36HD-ZIP family protein