PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022945970.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

SBP

Protein Properties

Length: 440aa MW: 49474.8 Da PI: 8.9543

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022945970.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	127.8	4.3e-40	161	237	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 CqvegC+ dls+ak+y+r+h+vCe hsk+p+v++ g+e+rfCqqCsrfh +s+fDe+krsCrrrL++hn+rrrk+q+ XP_022945970.1 161 CQVEGCNIDLSNAKDYYRKHRVCECHSKSPKVIIGGIERRFCQQCSRFHGISDFDEKKRSCRRRLSNHNARRRKPQS 237 **************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 440 aa Download sequence
MEWNARPSLQ WDWENLTVLN PRISGHGDIL HPTNFENKHG MNVGSSNSVG DARITGGPFF 60 ELGKTSPKNS KSVSQNSLSI EKSRTTKFTL EGFEPTLEDI DNKYEFVETS ICSCEPMLSL 120 KLGKQAYFEN TSAGNVKKPS VPLMESRATR KRCQNTLSPH CQVEGCNIDL SNAKDYYRKH 180 RVCECHSKSP KVIIGGIERR FCQQCSRFHG ISDFDEKKRS CRRRLSNHNA RRRKPQSKVI 240 SLNPARLSSW DFERRQINIF SDKLSLIYPI SRTNSAWESE LNTRHPQCGQ YVLKSEQACG 300 STGQLNVSRN EMRCVRAMPY HDTSKLVTFK GPATRVLDAA QDLQRALSLL STDLKGPYEA 360 KLISSDSPNR HGNPNYANQT ATSQSPMDLG IQSLPFASVD SGWPIESQVQ VPHPSIEGNG 420 LLQDLQLFKT PCEIGMFSNN

Sequence ? help Back to Top

Protein Sequence Length: 440 aa Download sequence

MEWNARPSLQ WDWENLTVLN PRISGHGDIL HPTNFENKHG MNVGSSNSVG DARITGGPFF  60
ELGKTSPKNS KSVSQNSLSI EKSRTTKFTL EGFEPTLEDI DNKYEFVETS ICSCEPMLSL  120
KLGKQAYFEN TSAGNVKKPS VPLMESRATR KRCQNTLSPH CQVEGCNIDL SNAKDYYRKH  180
RVCECHSKSP KVIIGGIERR FCQQCSRFHG ISDFDEKKRS CRRRLSNHNA RRRKPQSKVI  240
SLNPARLSSW DFERRQINIF SDKLSLIYPI SRTNSAWESE LNTRHPQCGQ YVLKSEQACG  300
STGQLNVSRN EMRCVRAMPY HDTSKLVTFK GPATRVLDAA QDLQRALSLL STDLKGPYEA  360
KLISSDSPNR HGNPNYANQT ATSQSPMDLG IQSLPFASVD SGWPIESQVQ VPHPSIEGNG  420
LLQDLQLFKT PCEIGMFSNN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	217	234	KKRSCRRRLSNHNARRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27360.4	9e-46	SBP family protein