PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022946081.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

ARF

Protein Properties

Length: 1098aa MW: 121881 Da PI: 6.4775

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022946081.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	73.1	3.4e-23	126	227	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 f+k+lt sd++++g +++p++ ae++ +++++ ++l+ +d++ +sW++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F ++++ XP_022946081.1 126 FCKTLTASDTSTHGGFSVPRRAAEKIfppldySMQPPA-QELVARDLHDNSWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFI--RDEK 217 99***************************9545444.38**********************************************..4567 PP E..EEEEE-S CS B3 90 felvvkvfrk 99 +l+++++r+ XP_022946081.1 218 SQLLLGIRRA 227 7789999997 PP
2	Auxin_resp	124	1.1e-40	252	334	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras+seFv++++k++ka++ +vs+GmRf+m+fete+s rr++Gt++g+sd+d+vrW+nS+Wr+L+ XP_022946081.1 252 AAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYAQVSLGMRFRMMFETEESGVRRYMGTITGISDMDSVRWKNSQWRNLQ 334 79*******************************************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 1098 aa Download sequence
MKAPPNGFLP NSGEGERKNI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMNKE 60 TDFIPSYPNL PSKLICMLHN VTLHADLETD EVYAQMTLQP VNKYEKEGLL ASDIGLKQNR 120 QPAEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDYSMQ PPAQELVARD LHDNSWTFRH 180 IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKSQL LLGIRRANRQ QPALSSSVIS 240 SDSMHIGILA SAAHAAANNS PFTIFYNPRA SPSEFVIPLA KYNKAMYAQV SLGMRFRMMF 300 ETEESGVRRY MGTITGISDM DSVRWKNSQW RNLQVGWDES AAGERPNRVS IWEVEPVVTP 360 FYICPPPFFR PKFPKQPGMP DDESEIENAF KRAMPWFGDE FGMKDASSSI FPGLSLVQWM 420 SMQHNNQFPA AQSGILPSMV APSALHGTLT NDESSKLLSF QAPVMSSPNL QFSKANQQNQ 480 VAQLPPTTWS QQQQVQQLLQ VPASQQLQQQ QLPLQQELQQ QVPQQQQLQM QQPQRQQQAS 540 QSALLNNGVT APNHLPNQTL QQPLVYSQLQ QQQLLAGNIQ SHQTSQPSNK NLFQTTSLSQ 600 EVQFQPQIEQ QPSLLPKHQQ PTQVQQAPLQ LMQQSLSQRA QQQPQVQQFS QPVPTEQQLQ 660 LQLLQKLQQQ QQQHPLLSPA SPLLPPQLLQ QQNVHQQNQQ LPPLPLSNQH QFSTSGGSLQ 720 TEKLNSNGFS SLGLMQSQQA PITHSHNQFK PTMAIRAYSG LTDGDAPSCS TSPSTNNCQV 780 SASNMLNKNQ QGAATLGGDP VAEPATNLAQ DLQSKPDLRI KHEFPSSKGL DQLKYKGTVP 840 DQLEACSSGT SYCLDAGTIQ QTFPLPTCLD NDVQSQPRNN IPFSNSMDGL APDTLLSRGY 900 DSQKDLQNLL SNYGGGVARD IETELSTAAI SSQSFGVPNL PFKSDCSNDV NVNEAGALSS 960 GLWANHSQRM RTYTKVQKRG SVGRCIDVTR YKGYDELRHD LARMFGIEGQ LEDPQRTDWK 1020 LVYVDHETDI LLVGDDPWEE FVSCVQSIKI LSSAEVQQMS LDGNLGHIQA PNQACSGTDS 1080 GNAWRGQYDD NSAASFNR

Sequence ? help Back to Top

Protein Sequence Length: 1098 aa Download sequence

MKAPPNGFLP NSGEGERKNI NSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMNKE  60
TDFIPSYPNL PSKLICMLHN VTLHADLETD EVYAQMTLQP VNKYEKEGLL ASDIGLKQNR  120
QPAEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDYSMQ PPAQELVARD LHDNSWTFRH  180
IYRGQPKRHL LTTGWSVFVS TKRLFAGDSV LFIRDEKSQL LLGIRRANRQ QPALSSSVIS  240
SDSMHIGILA SAAHAAANNS PFTIFYNPRA SPSEFVIPLA KYNKAMYAQV SLGMRFRMMF  300
ETEESGVRRY MGTITGISDM DSVRWKNSQW RNLQVGWDES AAGERPNRVS IWEVEPVVTP  360
FYICPPPFFR PKFPKQPGMP DDESEIENAF KRAMPWFGDE FGMKDASSSI FPGLSLVQWM  420
SMQHNNQFPA AQSGILPSMV APSALHGTLT NDESSKLLSF QAPVMSSPNL QFSKANQQNQ  480
VAQLPPTTWS QQQQVQQLLQ VPASQQLQQQ QLPLQQELQQ QVPQQQQLQM QQPQRQQQAS  540
QSALLNNGVT APNHLPNQTL QQPLVYSQLQ QQQLLAGNIQ SHQTSQPSNK NLFQTTSLSQ  600
EVQFQPQIEQ QPSLLPKHQQ PTQVQQAPLQ LMQQSLSQRA QQQPQVQQFS QPVPTEQQLQ  660
LQLLQKLQQQ QQQHPLLSPA SPLLPPQLLQ QQNVHQQNQQ LPPLPLSNQH QFSTSGGSLQ  720
TEKLNSNGFS SLGLMQSQQA PITHSHNQFK PTMAIRAYSG LTDGDAPSCS TSPSTNNCQV  780
SASNMLNKNQ QGAATLGGDP VAEPATNLAQ DLQSKPDLRI KHEFPSSKGL DQLKYKGTVP  840
DQLEACSSGT SYCLDAGTIQ QTFPLPTCLD NDVQSQPRNN IPFSNSMDGL APDTLLSRGY  900
DSQKDLQNLL SNYGGGVARD IETELSTAAI SSQSFGVPNL PFKSDCSNDV NVNEAGALSS  960
GLWANHSQRM RTYTKVQKRG SVGRCIDVTR YKGYDELRHD LARMFGIEGQ LEDPQRTDWK  1020
LVYVDHETDI LLVGDDPWEE FVSCVQSIKI LSSAEVQQMS LDGNLGHIQA PNQACSGTDS  1080
GNAWRGQYDD NSAASFNR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19220.1	0.0	ARF family protein