PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022946480.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

bHLH

Protein Properties

Length: 697aa MW: 75102.4 Da PI: 6.4689

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022946480.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50.7	3.1e-16	449	495	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K++Ka++L +A+eY+k Lq XP_022946480.1 449 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 495 6***********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 697 aa Download sequence
MPLSELCRVA REKLDSAQDR NDMVASDLSL SPENDVFELV WENGQILQQG QSSRTRKNSN 60 MNTSQPLCLP GHFNNAKMGK FGAIDSVVRD VIATGSSPEV ELARDDDDDD NDIVPWLSYP 120 LDGHLQHDYS SDFLPELSGV TINDHPARHS VASSIGKTSG VHQVNRYTRL NSLHGTNLED 180 GNISKLSTLD VSTTGPRSST NELRSLASQQ SQALFPHLRV KCTGSTENVP GKILHDSLIG 240 QTPHVPLIAS SSSSTARQKL DPTPSSNSPN VINFSHFLRP AALLKSNPQN HGVVGTVGSA 300 ANSQRDQSSC IRNESKACCK NAIVPSIDDN KPSDAKAPEQ LQAVKHPKLA CLGDSANNED 360 RTDRCLEVGA PKVLPDSEKA VESIFAASVC SRNSVEGASD DPKLNRKRKC HETEDSEWHS 420 DDVEEECNDV KRVTPTRGTG SKRSRAAEVH NLSERRRRDR INEKMRALQE LIPNCNKVDK 480 ASMLDEAIEY LKTLQLQVQI MSMGAGLFMP PMMSPGGMPF MNAPHMYSPM GVGMGMGFGI 540 GMPDVNVGPP GYPMVQVPHV QGTHFPGPSI PAQTVMHGMP GSNFQVLGLP GQGLPIPMPR 600 GPIAPFTGGP FMTNPGVAVA PVENFGSAAA CSLKDASPKS DSPMVPNGGT DPLTTPTPRQ 660 ANEQASCANG SRVNPTTKND LIKLPIITEE TTFIRLH

Sequence ? help Back to Top

Protein Sequence Length: 697 aa Download sequence

MPLSELCRVA REKLDSAQDR NDMVASDLSL SPENDVFELV WENGQILQQG QSSRTRKNSN  60
MNTSQPLCLP GHFNNAKMGK FGAIDSVVRD VIATGSSPEV ELARDDDDDD NDIVPWLSYP  120
LDGHLQHDYS SDFLPELSGV TINDHPARHS VASSIGKTSG VHQVNRYTRL NSLHGTNLED  180
GNISKLSTLD VSTTGPRSST NELRSLASQQ SQALFPHLRV KCTGSTENVP GKILHDSLIG  240
QTPHVPLIAS SSSSTARQKL DPTPSSNSPN VINFSHFLRP AALLKSNPQN HGVVGTVGSA  300
ANSQRDQSSC IRNESKACCK NAIVPSIDDN KPSDAKAPEQ LQAVKHPKLA CLGDSANNED  360
RTDRCLEVGA PKVLPDSEKA VESIFAASVC SRNSVEGASD DPKLNRKRKC HETEDSEWHS  420
DDVEEECNDV KRVTPTRGTG SKRSRAAEVH NLSERRRRDR INEKMRALQE LIPNCNKVDK  480
ASMLDEAIEY LKTLQLQVQI MSMGAGLFMP PMMSPGGMPF MNAPHMYSPM GVGMGMGFGI  540
GMPDVNVGPP GYPMVQVPHV QGTHFPGPSI PAQTVMHGMP GSNFQVLGLP GQGLPIPMPR  600
GPIAPFTGGP FMTNPGVAVA PVENFGSAAA CSLKDASPKS DSPMVPNGGT DPLTTPTPRQ  660
ANEQASCANG SRVNPTTKND LIKLPIITEE TTFIRLH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	454	459	ERRRRD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09530.2	9e-62	bHLH family protein