PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022947279.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

LBD

Protein Properties

Length: 303aa MW: 33710.8 Da PI: 6.9331

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022947279.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	138.9	1.7e-43	7	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrrkC+++Cv+apyfp +qp+kfanvhk+FGasnv+kll++l+ ++reda++sl+yeAe r+rdPvyG+vg+i+ lq++l+q++++l XP_022947279.1 7 PCAACKFLRRKCTQECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELNATQREDAVNSLAYEAEFRLRDPVYGCVGLISVLQHKLKQMQTDLY 101 7********************************************************************************************99 PP DUF260 96 llkee 100 +k+e XP_022947279.1 102 NAKKE 106 98876 PP

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence
MSSSNSPCAA CKFLRRKCTQ ECVFAPYFPP DQPQKFANVH KVFGASNVTK LLNELNATQR 60 EDAVNSLAYE AEFRLRDPVY GCVGLISVLQ HKLKQMQTDL YNAKKELSTY IGSQAMLPIL 120 QPPIAGNHPS SSSSSASAAA LLPYNMFPML GIPNSAPAPS SSHQMLIRDT PQQPQTQTQT 180 QNQNQLFEAQ QLAAAVAARE QQEMFRAYEQ KQNQTQTQHH SQRQQELMRF DGFDPAGNQI 240 NSSGSNLTLG TFVDNSYQIE AQPLQVQLFL QPQQTLVEQH PQTQHKPEPT AEDGRNMNMG 300 PSC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66870.1	3e-75	LBD family protein