PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022947747.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family LBD
Protein Properties Length: 195aa    MW: 21202.9 Da    PI: 6.0842
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022947747.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260132.51.7e-41351341100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrr+Ca  Cvlapyfp ++p+kfa++h++FGasn++k l++lpe++r da+ss+vyeA+ar+rdPvyG++g i +lq+q++ l+a+la
  XP_022947747.1  35 PCAACKILRRRCAGRCVLAPYFPPTEPAKFAIAHRVFGASNIIKCLQELPESQRADAVSSMVYEANARIRDPVYGSAGAICQLQKQVNDLQAQLA 129
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                     ++++e
  XP_022947747.1 130 KAQAE 134
                     *9987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    
MEGSDSITTV SSTPLSQSPS SSSSPASPPP LVLSPCAACK ILRRRCAGRC VLAPYFPPTE  60
PAKFAIAHRV FGASNIIKCL QELPESQRAD AVSSMVYEAN ARIRDPVYGS AGAICQLQKQ  120
VNDLQAQLAK AQAELVNMEC QQANLVAFVC RELAQSHPQC FDDFNASPHS GFHSITQTNF  180
DDYSNVNQLW EPLWT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.16e-59LBD family protein