PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022947852.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family MYB_related
Protein Properties Length: 245aa    MW: 27934.2 Da    PI: 8.779
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022947852.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.62.4e-1761106148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++t+E+ l +++++++G++ W++Iar+++ gRt++++k++w++++
   XP_022947852.1  61 RGKMSTQEERLVLELHAKWGNR-WSKIARKLP-GRTDNEIKNYWRTHM 106
                      89********************.*********.************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    
MDRARGHPTD LLCGLVWRSK MGFHCQSFRF EGGGRQFLGL NRTGKSCRLR WVNYLHPGLK  60
RGKMSTQEER LVLELHAKWG NRWSKIARKL PGRTDNEIKN YWRTHMRKKA QEKRRALCSS  120
SSSSSSSSCS SSSGPVKFFD SGGSEISASS STKKKGEENQ GVGDPNGYSM DDIWKDIDMC  180
DDHEGLIINQ DCNYSCPALN PPSWEYYCGD SSWKMEEEES KLIFSGYDDH NGRPRLAQAN  240
QNFFY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.43e-59MYB_related family protein