PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022947875.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

MYB

Protein Properties

Length: 242aa MW: 27680.9 Da PI: 6.788

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022947875.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.4	5.3e-16	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W+ eEd++l +v+++G++ W+ ++ g+ R++k+c++rw++yl XP_022947875.1 14 RGAWSSEEDDKLMGYVQKHGPRKWRQLPSLAGLARCGKSCRLRWLNYL 61 89********************************************97 PP
2	Myb_DNA-binding	48.7	1.8e-15	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+ T eE +l++++++++G++ W+ +a ++ gRt++++k++w+ + XP_022947875.1 67 KGNYTDEENDLIYKLHEMHGNR-WSMVATKLS-GRTDNEIKNHWNAH 111 7999****************.*****.*********976 PP

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence
MVRAPIVDKD GVKRGAWSSE EDDKLMGYVQ KHGPRKWRQL PSLAGLARCG KSCRLRWLNY 60 LRPGLKKGNY TDEENDLIYK LHEMHGNRWS MVATKLSGRT DNEIKNHWNA HLKKQIERKS 120 ESSTQPKPKK LRPNIASDLE AKTEEFTGYC STKFGIVESS SLSVQTSSSS SDANFGRLNW 180 AVEEYDRSGY GDLWNEPFMW DGDDVSYVLD GSMQFSADNG MFSPQVHETT YDDYIDLFCS 240 LL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34990.1	4e-53	MYB family protein