PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022947950.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C3H

Protein Properties

Length: 681aa MW: 74459.5 Da PI: 6.4569

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022947950.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	19.8	1.4e-06	278	298	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C+ Gd C +aHg XP_022947950.1 278 PCPEFRK-GACRQGDACEYAHG 298 8****.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 681 aa Download sequence
MVCNGCNSNS VSPNFMMDGC NRNLGFCISV LLEFSATDDL IGFRSAVEED GHDIDEASLW 60 YGRVFGSKKM GYEERTPLMV AAMFGSLNVL SYIVHSGRVD VNRACGSDGA TALHCAVAGG 120 SAVADQVVKY LLDAFADVNV VDANGYRPGD LIAPDFTLAS LYSRRKALQQ LLKGYGNDED 180 VLGSSEMIFY ERETQEAREV LTPRVLRDGT EKKEYPVDHS LPDIKNGIYS TDEFRMYTFK 240 IKPCTRAYSH DWTECPFVHP GENARRRDPR KYHYSCVPCP EFRKGACRQG DACEYAHGIF 300 ECWLHPAQYR TRLCKDETGC TRKVCFFAHK PEELRPLYAS TGSAVLSPRS ISGSSLDIPS 360 ISLLTLGSPS STPPLTPGVS SPLGGTMWQT QCNIAPPTLQ LPGSRLKAAL SARDMDLDAE 420 LLGLESQRRR QQQFMDELSC LPSPSRWNNG IPTPTSFPSP RSRNGELNGL GGMNPTNLEN 480 IYGSSVDPAL FPQLQGLSLD SVQSPSGMRQ SLNQSFLSNY ANSIGSPPAR SSQPFGHDSS 540 VSAAESLLSS RAAAFAKRSH SFIERGVVNR HSGHSPPATS TTVTPSNFPD WGSPNGKLDW 600 GIHGEELTKL RKSASFGLRS NSLATPAMHA TSSKPDVSWV QSLVNDAPTE NSVQLSMDEQ 660 QLCHIDNGDS KLYMEQKQLV A

Sequence ? help Back to Top

Protein Sequence Length: 681 aa Download sequence

MVCNGCNSNS VSPNFMMDGC NRNLGFCISV LLEFSATDDL IGFRSAVEED GHDIDEASLW  60
YGRVFGSKKM GYEERTPLMV AAMFGSLNVL SYIVHSGRVD VNRACGSDGA TALHCAVAGG  120
SAVADQVVKY LLDAFADVNV VDANGYRPGD LIAPDFTLAS LYSRRKALQQ LLKGYGNDED  180
VLGSSEMIFY ERETQEAREV LTPRVLRDGT EKKEYPVDHS LPDIKNGIYS TDEFRMYTFK  240
IKPCTRAYSH DWTECPFVHP GENARRRDPR KYHYSCVPCP EFRKGACRQG DACEYAHGIF  300
ECWLHPAQYR TRLCKDETGC TRKVCFFAHK PEELRPLYAS TGSAVLSPRS ISGSSLDIPS  360
ISLLTLGSPS STPPLTPGVS SPLGGTMWQT QCNIAPPTLQ LPGSRLKAAL SARDMDLDAE  420
LLGLESQRRR QQQFMDELSC LPSPSRWNNG IPTPTSFPSP RSRNGELNGL GGMNPTNLEN  480
IYGSSVDPAL FPQLQGLSLD SVQSPSGMRQ SLNQSFLSNY ANSIGSPPAR SSQPFGHDSS  540
VSAAESLLSS RAAAFAKRSH SFIERGVVNR HSGHSPPATS TTVTPSNFPD WGSPNGKLDW  600
GIHGEELTKL RKSASFGLRS NSLATPAMHA TSSKPDVSWV QSLVNDAPTE NSVQLSMDEQ  660
QLCHIDNGDS KLYMEQKQLV A

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58620.1	1e-175	C3H family protein