PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022948002.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

Trihelix

Protein Properties

Length: 495aa MW: 57083.6 Da PI: 4.855

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022948002.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	88.9	5.5e-28	41	125	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+++e+ aL+++r++m++++r+++lk+plWeevs+k++e g+er++k+Ckek+en+ k++k+++ +++++ ++ ++++yf+qlea XP_022948002.1 41 RWPREETIALLKVRSSMDTAFRDASLKAPLWEEVSRKLAELGYERNAKKCKEKFENIYKYHKRTRVIRSGK--PNGKNYRYFEQLEA 125 8****************************************************************9985..66679*****85 PP
2	trihelix	101.6	6e-32	322	407	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k+e+ aLi++r+++e +++++ k+plWee s++m++ g+ rs+k+Ckekwen+nk++k++ke++kkr +e+s+tcpyf+ql+a XP_022948002.1 322 RWPKEEIDALIQLRTNLEMKYQENGPKGPLWEEMSQAMKKLGYDRSAKRCKEKWENINKYFKRVKERNKKR-PEDSKTCPYFQQLDA 407 8*******************************************************************8.99*********85 PP

Sequence ? help Back to Top
Protein Sequence Length: 495 aa Download sequence
MLEISTSPEN SAAAAAAVEE DGAASSAGFK EESDRSWAGN RWPREETIAL LKVRSSMDTA 60 FRDASLKAPL WEEVSRKLAE LGYERNAKKC KEKFENIYKY HKRTRVIRSG KPNGKNYRYF 120 EQLEALDNHP LLPSQADSME EIPNNIVHNP IPCSIVNPGS NFVETTTTSI STSTTSCSSK 180 ESGGVRKKKR KFVEFFERLM NEVIEKQEKL QRKFMEALEK CEEERLAREE EWRVQELARI 240 KKERERLNQE RSIAAAKDAA LLSFLKMFSE QMGTVPFPES LILMENLTEK QDDGNVERNT 300 SNQENTNNSN NGNSNQISSS SRWPKEEIDA LIQLRTNLEM KYQENGPKGP LWEEMSQAMK 360 KLGYDRSAKR CKEKWENINK YFKRVKERNK KRPEDSKTCP YFQQLDALYK LKSKKVVVVE 420 NPTKPNYELK PEELLMHMME GQEEESHQQP ESAADNGEAQ NTDQNEDEDE DEDEDEDEDD 480 QIVAKNNSNE MEVGI

Sequence ? help Back to Top

Protein Sequence Length: 495 aa Download sequence

MLEISTSPEN SAAAAAAVEE DGAASSAGFK EESDRSWAGN RWPREETIAL LKVRSSMDTA  60
FRDASLKAPL WEEVSRKLAE LGYERNAKKC KEKFENIYKY HKRTRVIRSG KPNGKNYRYF  120
EQLEALDNHP LLPSQADSME EIPNNIVHNP IPCSIVNPGS NFVETTTTSI STSTTSCSSK  180
ESGGVRKKKR KFVEFFERLM NEVIEKQEKL QRKFMEALEK CEEERLAREE EWRVQELARI  240
KKERERLNQE RSIAAAKDAA LLSFLKMFSE QMGTVPFPES LILMENLTEK QDDGNVERNT  300
SNQENTNNSN NGNSNQISSS SRWPKEEIDA LIQLRTNLEM KYQENGPKGP LWEEMSQAMK  360
KLGYDRSAKR CKEKWENINK YFKRVKERNK KRPEDSKTCP YFQQLDALYK LKSKKVVVVE  420
NPTKPNYELK PEELLMHMME GQEEESHQQP ESAADNGEAQ NTDQNEDEDE DEDEDEDEDD  480
QIVAKNNSNE MEVGI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	9e-60	Trihelix family protein