PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022948259.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

WRKY

Protein Properties

Length: 542aa MW: 59259 Da PI: 7.9639

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022948259.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	106.7	1.1e-33	205	262	2	60
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 dDgynWrKYGqK+vkgse+prsYY+Ct+++Cp+kkkvers d++++ei+Y+g+Hnh+k XP_022948259.1 205 DDGYNWRKYGQKQVKGSENPRSYYKCTFPNCPTKKKVERSL-DGQITEIVYKGSHNHPK 262 8**************************************.*************85 PP
2	WRKY	106	1.9e-33	374	432	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct +gCpv+k+ver+++d ++v++tYeg+Hnhe XP_022948259.1 374 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCPVRKHVERASHDLRAVITTYEGKHNHE 432 59********************************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 542 aa Download sequence
MASSSGSLDT SANSHPSFTF STHPFMTTSY SDLLAAGSND LPSSAAAHGA HRGSGTGVPK 60 FKSLPPPSLP LSPPTLFPSP LFSIPPGLSP TELLDSPVLL SASYVLPSPT TGSFPSQSLN 120 WKNNSGYNQQ SIKEENKFLS EFSFLNQSSQ PPPTSFQPAP TTEGKKQDGS MQSFSPEYGI 180 VQNQSRNNAG RDYPQQSQTV NRRSDDGYNW RKYGQKQVKG SENPRSYYKC TFPNCPTKKK 240 VERSLDGQIT EIVYKGSHNH PKPQSTRKSS LSSAVSASNP AASDMAEQSF TTQGSSQFDG 300 VATPENSLIS VGDDEFDRSS QRSKSAGDDN DEDEPEAKRW RRDGDNSEGI SAAGNRTVRE 360 PRVVVQTTSD IDILDDGYRW RKYGQKVVKG NPNPRSYYKC TNPGCPVRKH VERASHDLRA 420 VITTYEGKHN HEVPPARGSG SHSLSRPFPS NDPSATAIRP LAVTHQANNG ADNNNDNLLH 480 GLRQTPFTLE MVQNSNGFSF PEFGNSMGMG SYMNPTQSKD SLFVRAKEEP RDHDMFIQSL 540 LC

Sequence ? help Back to Top

Protein Sequence Length: 542 aa Download sequence

MASSSGSLDT SANSHPSFTF STHPFMTTSY SDLLAAGSND LPSSAAAHGA HRGSGTGVPK  60
FKSLPPPSLP LSPPTLFPSP LFSIPPGLSP TELLDSPVLL SASYVLPSPT TGSFPSQSLN  120
WKNNSGYNQQ SIKEENKFLS EFSFLNQSSQ PPPTSFQPAP TTEGKKQDGS MQSFSPEYGI  180
VQNQSRNNAG RDYPQQSQTV NRRSDDGYNW RKYGQKQVKG SENPRSYYKC TFPNCPTKKK  240
VERSLDGQIT EIVYKGSHNH PKPQSTRKSS LSSAVSASNP AASDMAEQSF TTQGSSQFDG  300
VATPENSLIS VGDDEFDRSS QRSKSAGDDN DEDEPEAKRW RRDGDNSEGI SAAGNRTVRE  360
PRVVVQTTSD IDILDDGYRW RKYGQKVVKG NPNPRSYYKC TNPGCPVRKH VERASHDLRA  420
VITTYEGKHN HEVPPARGSG SHSLSRPFPS NDPSATAIRP LAVTHQANNG ADNNNDNLLH  480
GLRQTPFTLE MVQNSNGFSF PEFGNSMGMG SYMNPTQSKD SLFVRAKEEP RDHDMFIQSL  540
LC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38470.1	1e-112	WRKY family protein