PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022948296.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family HD-ZIP
Protein Properties Length: 757aa    MW: 84689.9 Da    PI: 6.7221
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022948296.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox67.71.5e-2196151156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     r+k +++t+eq++e+e+lF+++++p++++r++L+k+lgL+ rqVk+WFqNrR++ k
  XP_022948296.1  96 RKKYHRHTTEQIREMEALFKESPHPDEKQRQQLSKRLGLSPRQVKFWFQNRRTQIK 151
                     7999************************************************9877 PP
2START202.12.3e-632704915206
                     HHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEE CS
           START   5 eaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevi 85 
                     +a++el ++a  +ep+W +s     e++n+de+l++f  +++      +++ea+r+++vv+m++ +l ++++d + qW+e+++    ka+t++vi
  XP_022948296.1 270 QALEELKTMAVTNEPLWIRSIetgrEILNYDEYLKTFHVKNSnacwlkRHIEASRDTTVVFMEPSRLIQSFMDEN-QWKEMFPsmisKAATIDVI 363
                     67899999*****************************777669********************************.******************* PP

                     CTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS
           START  86 ssg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlk 173
                     ++g      ga+qlm+ e q+l+plvp R+ +f+R+++ql a+ w+ivdvS+d+ ++ + ++s+++ +++pSg++i+++sngh+kvt+veh +++
  XP_022948296.1 364 CNGevanwnGAVQLMFVEVQLLTPLVPtREIYFIRHCKQLDAELWAIVDVSIDNVDDTNIDASLMKYRKRPSGCIIKDESNGHCKVTMVEHLECE 458
                     *********************************************************999*********************************** PP

                     SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 174 grlphwllrslvksglaegaktwvatlqrqcek 206
                     +  +h+l+r +v++g+a+ga++w+atlq qce+
  XP_022948296.1 459 KTKVHNLYRTIVNNGTAFGARHWMATLQLQCER 491
                     *******************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 757 aa     Download sequence    
MSNNNNRLAF TKDFFSSPAL SLTLAGIFRR GEMAEKGDVE MEEVDDGSGE VRRDDAAEVS  60
SENLGPVRSR SDDDFEGGGV HEENEEGDGG CLVKRRKKYH RHTTEQIREM EALFKESPHP  120
DEKQRQQLSK RLGLSPRQVK FWFQNRRTQI KAIQERHENT LLKAEMEKLR EENKAMRELT  180
KKKVGCPNCG TANAAEDHTA FTTTEQLRIK NAKLKAEVEK LRAALGKHSQ SSISPSYSSG  240
NDQEANRNCL DFYTGIFGLE KSRIMERVHQ ALEELKTMAV TNEPLWIRSI ETGREILNYD  300
EYLKTFHVKN SNACWLKRHI EASRDTTVVF MEPSRLIQSF MDENQWKEMF PSMISKAATI  360
DVICNGEVAN WNGAVQLMFV EVQLLTPLVP TREIYFIRHC KQLDAELWAI VDVSIDNVDD  420
TNIDASLMKY RKRPSGCIIK DESNGHCKVT MVEHLECEKT KVHNLYRTIV NNGTAFGARH  480
WMATLQLQCE RLAFFMATNI PIKDSTGVAT LAGRKSILKL AERMSSSFSQ AVAASSYQTW  540
TKVVGKTGED IRVCSRKNLS DPGEPIGVIL CAVFSLWLPV PPHTLFHFLR DEARRNEWDA  600
MFGGDKVESI ANLAKGQDRG NSVSIQTRGS KESSSMWILQ DASTNSSESM VVYSGVDVSG  660
MQSVMTGCDS GSLTILPSGF SILPDGAESR SLLITRQKDH KSSDTHGGAL LTAAVQIVTD  720
ASPSAKPTVD SVEYVKSIVC CTMKNIRSSL GCCEDDC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein