PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022948431.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

MYB_related

Protein Properties

Length: 658aa MW: 73316.7 Da PI: 8.937

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022948431.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.3	1.5e-07	560	609	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av++lG+g+W+ + + k+Rt ++k++w ++ XP_022948431.1 560 RRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 609 6789999*****************9988889************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 658 aa Download sequence
MVLQKRLDYG FHDYQVPTMP RATRSARKRS ICKKGTEGSQ MRAFDLLATV ADKLLHGTEG 60 PTTNTIDTST EKDRYTVVDK ELNVDSLCKV EPSQGFVSEL VLSGHDKKCE SKDCFPQHNE 120 HVEHSLPLAS EVTNFEMGNL ASEVRVGSPI SKESDNCELD GKSEVIVKYE LLKTEEVLTR 180 TQDRGDDSCK REDPVIWDQK ARVLGNSVSC GKVIHNKQIV QNSYFATQNN VKVVDRDDDE 240 NSSGCTHPVS SIKSFRTVPS SRDRRIKKVS ASKSWKVVPR YRDESLSKTD GVWKSLSCCK 300 SSHDSCRPQK SQMNIPFKKR KFFDCSSSVS NSDGGVNSEG ISDSNGKVAK MDSSGHGHHK 360 SFQSKDSHVK IRIKSFRVPE LFIEIAETAT VGSLKRTVME AVTAILGGGL RVGVLLQGKK 420 VRDDNKTLFQ TGISHDNQLD SLGFALEPNP SRTPLVLCKE DSPCILPCDA PEPLTRYSPD 480 ASADHPGSSN VLPEPHGDSL GNFIESDHDS APSPTDTSNH KSTVDSKALV TVPAMTAEAI 540 SVVPMHRKSK RSEVAQRRIR RPFSVAEVEA LVQAVEKLGT GRWRDVKLRA FDNAKHRTYV 600 DLKDKWKTLV HTARISPQQR RGEPVPQELL DRVLTAHAYW SKQQAKYQLK RQPERFLL

Sequence ? help Back to Top

Protein Sequence Length: 658 aa Download sequence

MVLQKRLDYG FHDYQVPTMP RATRSARKRS ICKKGTEGSQ MRAFDLLATV ADKLLHGTEG  60
PTTNTIDTST EKDRYTVVDK ELNVDSLCKV EPSQGFVSEL VLSGHDKKCE SKDCFPQHNE  120
HVEHSLPLAS EVTNFEMGNL ASEVRVGSPI SKESDNCELD GKSEVIVKYE LLKTEEVLTR  180
TQDRGDDSCK REDPVIWDQK ARVLGNSVSC GKVIHNKQIV QNSYFATQNN VKVVDRDDDE  240
NSSGCTHPVS SIKSFRTVPS SRDRRIKKVS ASKSWKVVPR YRDESLSKTD GVWKSLSCCK  300
SSHDSCRPQK SQMNIPFKKR KFFDCSSSVS NSDGGVNSEG ISDSNGKVAK MDSSGHGHHK  360
SFQSKDSHVK IRIKSFRVPE LFIEIAETAT VGSLKRTVME AVTAILGGGL RVGVLLQGKK  420
VRDDNKTLFQ TGISHDNQLD SLGFALEPNP SRTPLVLCKE DSPCILPCDA PEPLTRYSPD  480
ASADHPGSSN VLPEPHGDSL GNFIESDHDS APSPTDTSNH KSTVDSKALV TVPAMTAEAI  540
SVVPMHRKSK RSEVAQRRIR RPFSVAEVEA LVQAVEKLGT GRWRDVKLRA FDNAKHRTYV  600
DLKDKWKTLV HTARISPQQR RGEPVPQELL DRVLTAHAYW SKQQAKYQLK RQPERFLL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07540.1	1e-124	MYB_related family protein