PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022948667.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family MIKC_MADS
Protein Properties Length: 249aa    MW: 28299.4 Da    PI: 6.7769
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022948667.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.43.8e-28959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien   rqvtfskRr+g+lKKA+EL +LCdaevaviifs+tgkl+e+ss
  XP_022948667.1  9 KRIENANSRQVTFSKRRAGLLKKAQELAILCDAEVAVIIFSNTGKLFEFSS 59
                    79***********************************************96 PP
2K-box609.7e-218317011100
           K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                     ++ +++ ++e+++L++ei +Lq +q +llG+dL+ L +keLq+LeqqL+++l  +++kK  ll+eq+e+++ +e+++  en++Lr+++ e
  XP_022948667.1  83 HKAEKQEHEEVDNLRDEITTLQMKQLQLLGKDLTGLGFKELQNLEQQLNEGLLLVKEKK--LLMEQLEQSRVQEQRAMLENETLRRQVSE 170
                     445677899***********************************************997..9************************9975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    
MGRGKIEIKR IENANSRQVT FSKRRAGLLK KAQELAILCD AEVAVIIFSN TGKLFEFSSS  60
GMKHTLSRYN RCIESSETPI DGHKAEKQEH EEVDNLRDEI TTLQMKQLQL LGKDLTGLGF  120
KELQNLEQQL NEGLLLVKEK KLLMEQLEQS RVQEQRAMLE NETLRRQVSE LRCLFPPVDC  180
PLPAYLEYCS LEKKKAGIRV PDVACNSEIE RGDSDTTLHL GLPSHVYCKR KEAERDTHSN  240
DSGSQMGLL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.11e-67MIKC_MADS family protein