PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022948912.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

bHLH

Protein Properties

Length: 227aa MW: 25027.3 Da PI: 7.2629

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022948912.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.9	3.6e-08	152	193	8	54
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + r+RR++i +++ L++l+P K++ a++L +A Y+k L XP_022948912.1 152 AARKRREKISEKIRVLQRLVPGG-----SKMDTASMLDEAASYLKFL 193 569****************95.....5**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence
MDDLLWNGSW NNGEDDGGKE SLLFSDGSSR CSSPPLQELQ TVARILGLSE IETPTPEMRA 60 VELAVDPKSW PAGASSGGLL LEELENDKGI GVSPSSSNNY ETASSDRDQI MSRMKEMIYH 120 AAVFRPVNLG IETVEKKRRR NVKMSKEPQT VAARKRREKI SEKIRVLQRL VPGGSKMDTA 180 SMLDEAASYL KFLRAQIKAL EGNGYKLGSS CTSFNPTSFP SNAYFPF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	136	157	KKRRRNVKMSKEPQTVAARKRR
2	136	159	KKRRRNVKMSKEPQTVAARKRREK
3	137	158	KKRRRNVKMSKEPQTVAARKRR
4	137	160	KKRRRNVKMSKEPQTVAARKRREK
5	138	159	KKRRRNVKMSKEPQTVAARKRR
6	154	159	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	2e-39	bHLH family protein