PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022949087.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family M-type_MADS
Protein Properties Length: 360aa    MW: 40840.2 Da    PI: 6.5068
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022949087.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.41.2e-201053245
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    + e++  rqvt+skRr+gilKKA EL +LCd+++ +++fs+tg+
  XP_022949087.1 10 KLESTGSRQVTYSKRRHGILKKARELAILCDIDIVLLMFSPTGR 53
                    5688999***********************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    
MGRVKLKIKK LESTGSRQVT YSKRRHGILK KARELAILCD IDIVLLMFSP TGRPTLYQGE  60
RSNIEEVITK FSQLTPQERA KRKLESLEAL KKTFKKLDHD VNIKDFVGSS SQDSEQELTN  120
EVSILRDQIA DSHKRLSYWR NLDNINNIEH LQKMEDLARE SLNQMRLHKE NVRRHQILSQ  180
DFTCQYPGGG MSLPLMMDDM QGTQPLLWFP NYCSQQIALP TETSFLQPGD VECSMATSFS  240
SFPSFFNPGK QLEAGISGQV DSMPQGDGGL NELSGTSCST LQLCDQYPYP TCDGSNFQDD  300
KKLNLEMEMN LHANCINNQL NGKLELSRAL YGDDQHPWAS IPGPCSIPMY QSNAYHHQPN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18750.15e-91M-type_MADS family protein