PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022949138.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family HD-ZIP
Protein Properties Length: 697aa    MW: 77154.2 Da    PI: 6.7382
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022949138.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.72.7e-202378156
                    TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    r++ +++t++q+++Le++F+++++p++++r +L+++lgL  rq+k+WFqNrR+++k
  XP_022949138.1 23 RKRYHRHTANQIQRLEAMFKECPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMK 78
                    789999***********************************************998 PP
2START170.21.3e-532104342205
                     HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                     +a  a+ el+++ + +ep+W+ks+    + ++ +++ q f+++++      +++e++r+sgvv+ ++a+lv  ++d++ +W+e ++    +a t+
  XP_022949138.1 210 VATNAMGELLRLCQTNEPLWMKSRsdgrDVLDLETYEQAFPRANAplenlhFRTEVSRDSGVVIVNSATLVDMFMDSN-KWSELFPtivsSARTI 303
                     7788999*****************9999999999999***99999*********************************.**************** PP

                     EEECTT.......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS
           START  83 evissg.......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwveh 169
                     evissg       g lqlm+ elq+lsplvp R f+++Ry++q ++g w++vdvS +++   +   s   +++ pSg+li++++ng+skvtw+eh
  XP_022949138.1 304 EVISSGmlgshhnGSLQLMYLELQLLSPLVPtRHFYVLRYCQQIEQGMWAVVDVSYNVTGGSQ-MVSHSQCRRSPSGCLIQDMPNGYSKVTWIEH 397
                     *********************************************************999988.577777889********************** PP

                     EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXX CS
           START 170 vdlkgrlp.hwllrslvksglaegaktwvatlqrqce 205
                     v+++++   hwl+r l++sgla+ a +w+atlqr  e
  XP_022949138.1 398 VEVEDKGStHWLFRDLIHSGLAFSAERWLATLQRTSE 434
                     ***999888************************9877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 697 aa     Download sequence    
MEFGTGGGGG WDNDSSSDPR RSRKRYHRHT ANQIQRLEAM FKECPHPDEK QRLQLSRELG  60
LAPRQIKFWF QNRRTQMKAQ HERADNSALR AENDKIRCEN IAIREALKNV ICPSCGGPPL  120
HDAYFDEHKL RMENAHLKEE LDRVSSMAAK YIGRPISQPS HFSSLELSMS SFSSHEMGCS  180
SLDLDLLPAS SSNVLPIHLS NMDKTLMSEV ATNAMGELLR LCQTNEPLWM KSRSDGRDVL  240
DLETYEQAFP RANAPLENLH FRTEVSRDSG VVIVNSATLV DMFMDSNKWS ELFPTIVSSA  300
RTIEVISSGM LGSHHNGSLQ LMYLELQLLS PLVPTRHFYV LRYCQQIEQG MWAVVDVSYN  360
VTGGSQMVSH SQCRRSPSGC LIQDMPNGYS KVTWIEHVEV EDKGSTHWLF RDLIHSGLAF  420
SAERWLATLQ RTSERFACSM VTSSSSQDLG GVIPSLEGRR SMMKLAQRMV NNFCASITTS  480
HGHRWTTLSG TDEVGVCVSV HKSMDPGQRN GVVLSAATTI WLPVPPQTIF NFFKNDRTRS  540
QWDVLSDGNP VQEVAHITNG SHPGNCISVL RALNSTQNNM LILQESCIDS SGSLVVYCPV  600
DLPAMNLAMS GEDPSSIPLL PSGFAILPDG RQDQGEGASS SSDVQRSGGS LVTVAFQILV  660
SSLPSGKLNL ESVTTVNNLI STTVHQIKTA LNCHSSS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0HD-ZIP family protein