PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022949216.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family HD-ZIP
Protein Properties Length: 218aa    MW: 24714.9 Da    PI: 8.6888
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022949216.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox49.19.7e-1681136256
                     T--SS--HHHHHHHHHHHHHSSS--.HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknryps.aeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ ++++eq   Le+ F+ ++++  ++++ eLA++l+L  rqV vWFqNrRa+ k
  XP_022949216.1  81 RKKLRLSREQSAFLEDSFKDHHTLYpQKQKVELARRLNLRPRQVEVWFQNRRARTK 136
                     788899*************9777751457889**********************98 PP
2HD-ZIP_I/II116.41.7e-3781172192
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLep.erKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     +kk+rls+eq+++LE+sF+ +++L p ++Kvelar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l+++n++L+ke ++Lr +lk
  XP_022949216.1  81 RKKLRLSREQSAFLEDSFKDHHTLYPqKQKVELARRLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKNCCQTLTQQNRKLRKELQDLR-ALK 172
                     69*********************998358***********************************************************9.555 PP
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    
MELGLRLGDQ QQTHSHNPKL LHLALLPPTP TPDGGGGESP RNPYLCSSLE LGLYEVEEHQ  60
GNSDRGCSRG SDEDDQILGS RKKLRLSREQ SAFLEDSFKD HHTLYPQKQK VELARRLNLR  120
PRQVEVWFQN RRARTKLKQT EVDCEYLKNC CQTLTQQNRK LRKELQDLRA LKTTDSLFMH  180
SPATTLTMCA SCERAAVLHP LNSKASGFSF TTNGSSPQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18086SRKKLRL
2131139RRARTKLKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.13e-62HD-ZIP family protein