PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022949284.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

MYB

Protein Properties

Length: 385aa MW: 43876.3 Da PI: 10.0385

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022949284.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	50.4	5.2e-16	4	53	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 r+rW +eEd ll +vkq+G++ W++I+++mg + R +k+c +rw +yl XP_022949284.1 4 RQRWQPEEDALLRAYVKQYGPKEWNLISQRMGkpLYRDPKSCLERWKNYL 53 89**********************************************97 PP
2	Myb_DNA-binding	34	6.9e-11	59	103	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+ ++eE+ l + + +++G++ Wk+Ia++++ gRt+k + +w + XP_022949284.1 59 KGSLSPEEQTLVISLQAKYGNK-WKKIAAEVP-GRTAKRLGKWWEVF 103 57789***************.*****.***999999766 PP

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence
MKDRQRWQPE EDALLRAYVK QYGPKEWNLI SQRMGKPLYR DPKSCLERWK NYLKPGLKKG 60 SLSPEEQTLV ISLQAKYGNK WKKIAAEVPG RTAKRLGKWW EVFKEKQLKK LQKAQNLTQR 120 RDYQNSDGNL SISGVSSPEK ALQGPYDHIL ETFAEKYVQP KLYSAAFQSP PPPPPLANVM 180 PRLPVPDADP VLSLGSVNST TSSSTVLPLW MNVNSTSTAS SSTSSTTPSP SVSLTLSPSE 240 PVVLDSEMNR LLPVQQMGAL VLYCKELEEG RQIWLQHKKE ATWRLTRLEQ QLESEKARKK 300 REKMEEMEAK IRRLREEEMA YLGRIESDYR EQVSAMRRDA ENKEAKLLEA WCSKHTKLTK 360 LVEQIGNQGQ GLVVVAAGNS KDMIH

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence

MKDRQRWQPE EDALLRAYVK QYGPKEWNLI SQRMGKPLYR DPKSCLERWK NYLKPGLKKG  60
SLSPEEQTLV ISLQAKYGNK WKKIAAEVPG RTAKRLGKWW EVFKEKQLKK LQKAQNLTQR  120
RDYQNSDGNL SISGVSSPEK ALQGPYDHIL ETFAEKYVQP KLYSAAFQSP PPPPPLANVM  180
PRLPVPDADP VLSLGSVNST TSSSTVLPLW MNVNSTSTAS SSTSSTTPSP SVSLTLSPSE  240
PVVLDSEMNR LLPVQQMGAL VLYCKELEEG RQIWLQHKKE ATWRLTRLEQ QLESEKARKK  300
REKMEEMEAK IRRLREEEMA YLGRIESDYR EQVSAMRRDA ENKEAKLLEA WCSKHTKLTK  360
LVEQIGNQGQ GLVVVAAGNS KDMIH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	298	303	RKKREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37630.1	2e-58	MYB family protein