PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022949730.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

MYB

Protein Properties

Length: 344aa MW: 39153.5 Da PI: 6.1751

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022949730.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	60.5	3.7e-19	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd++l+d+++++G g+W+t ++ g+ R++k+c++rw +yl XP_022949730.1 14 KGPWTPEEDQKLIDYIQKHGYGNWRTLPKNAGLQRCGKSCRLRWTNYL 61 79********************************************97 PP
2	Myb_DNA-binding	54.6	2.5e-17	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rgr++ eE+e +++++ lG++ W++Ia++++ gRt++++k++w+++ XP_022949730.1 67 RGRFSFEEEETIIQLHSILGNK-WSAIAARLP-GRTDNEIKNYWNTH 111 89******************.*****.**********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence
MGRTPCCEKE GLKKGPWTPE EDQKLIDYIQ KHGYGNWRTL PKNAGLQRCG KSCRLRWTNY 60 LRPDIKRGRF SFEEEETIIQ LHSILGNKWS AIAARLPGRT DNEIKNYWNT HIRKKLMRMG 120 IDPVTHNPRL DVLDLSSIFG SSFCNNPNSQ INSFSRLIGI HNRLANSFMS FNNISHFSMQ 180 NVENHEQSNM IISQSQLLPP QQPHYQIDQS PALPPLHEAS AGCSPSTTTS CGGEAYLFPS 240 SNFSDFYSQN CQQQTQELNG FNYSECALPS YDLYKQEQEQ VHQQIIEPSP ETSTLNSSPT 300 PLNSNSTYFS TANGNGTDQD EKESYCSDFF KFEVPDLLDV NPFV

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence

MGRTPCCEKE GLKKGPWTPE EDQKLIDYIQ KHGYGNWRTL PKNAGLQRCG KSCRLRWTNY  60
LRPDIKRGRF SFEEEETIIQ LHSILGNKWS AIAARLPGRT DNEIKNYWNT HIRKKLMRMG  120
IDPVTHNPRL DVLDLSSIFG SSFCNNPNSQ INSFSRLIGI HNRLANSFMS FNNISHFSMQ  180
NVENHEQSNM IISQSQLLPP QQPHYQIDQS PALPPLHEAS AGCSPSTTTS CGGEAYLFPS  240
SNFSDFYSQN CQQQTQELNG FNYSECALPS YDLYKQEQEQ VHQQIIEPSP ETSTLNSSPT  300
PLNSNSTYFS TANGNGTDQD EKESYCSDFF KFEVPDLLDV NPFV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21440.1	1e-100	MYB family protein