PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022949772.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family HD-ZIP
Protein Properties Length: 325aa    MW: 37299.2 Da    PI: 4.463
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022949772.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.81.9e-1857110356
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     k+++++ +q+++Le+ Fe ++++  +++ +LA +lgL+ rqV vWFqNrRa++k
  XP_022949772.1  57 KKRRLSVDQVKALEKTFEIENKLEPDRKVKLALELGLQPRQVAVWFQNRRARWK 110
                     456899***********************************************9 PP
2HD-ZIP_I/II126.89.5e-4156148193
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     ekkrrls +qvk+LE++Fe e+kLep+rKv+la eLglqprqvavWFqnrRAR+ktkqlE+dy  Lk++y++lk++ ++L++++++L +e+ke
  XP_022949772.1  56 EKKRRLSVDQVKALEKTFEIENKLEPDRKVKLALELGLQPRQVAVWFQNRRARWKTKQLERDYGLLKANYETLKRSFDTLQQDNDALLKEIKE 148
                     69**************************************************************************************99987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    
MKRHGSSDSL GALMSVCPTP DEQSPRNSHV YGREFQSMLD GLDEEGSMEE QCHVGEKKRR  60
LSVDQVKALE KTFEIENKLE PDRKVKLALE LGLQPRQVAV WFQNRRARWK TKQLERDYGL  120
LKANYETLKR SFDTLQQDND ALLKEIKELK LKLEEEKTER HLSVKEEIFV PESDNLLIEQ  180
TNNHLPVDHI PFPVSSDHSD DFNYESFRIA SAVDGDEQRV EVSLFPDFKD GSSDSDSSAI  240
LNEDNSPNAV VSSTAAGMLQ SEQQILSSPT SSLNWFPYQK AATYNNAQQY VKIEEYNFFS  300
GEESCDLFSD EQAPSMHWYC PDEWN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15786KKRRLSVDQVKALEKTFEIENKLEPDRKVK
2105113RRARWKTKQ
3126131ETLKRS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22430.13e-71HD-ZIP family protein