PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022950052.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

bHLH

Protein Properties

Length: 621aa MW: 68100.5 Da PI: 6.5343

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022950052.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.4	1.1e-12	450	495	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h e+Er+RR+++N++f Lr ++P+ K++Ka+ L Av YI++L XP_022950052.1 450 NHVEAERQRREKLNQKFYALRAVVPNV-----SKMDKASLLGDAVSYINEL 495 799*********************6.....5*************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 621 aa Download sequence
MTDYRFSTMN LWTDENASAM DAFTNSDLSS YWAPSAASSQ SLHHPPPTQS SASTTTPPSV 60 PSKSIAVLNQ ETLQQRLQAL IDGARESWTY AIFWQSSYDY SGGSVLGWGD GYYKGEENKG 120 RGKTKMVSSA AEQAHRKKVL RELNSLISGS ATGLDDVVDE EVTDTEWFFL VSMTQSFVNG 180 VGLPSQALLS SRPIWISGAD RLSASGCDRA RQGRIFGLQT MVCIPLPNGV VEMGSTEAIY 240 ITTDLMNKVK TLFNFNNLET GSWQSGTTGV TVADEGENDP SSLWISEPSN TIEMKDSITT 300 TVLSGGASAK PIHSENPSSS SLTENASRKQ TPSLNFPDYA AAAAPTNPSF KSESGGMLSF 360 GNKSLFSGNS QNETKKSPTS RRSTDEGILC FTTDAILPFF GKVKSGDSDH SDPEASAIPE 420 VDSCIKPSEP EKRPRKRGRK PANGREEPLN HVEAERQRRE KLNQKFYALR AVVPNVSKMD 480 KASLLGDAVS YINELKLKLE MAESKKTEIE KQLEFMKKNG GTGRKDTGNY TNTVNEDLKM 540 EIQVKIMGSD AMIRVECSKK NHPAARLMAA LKDLDLEMIH ASVSVVNDLM IQQAAVKMES 600 RVYTTEQLKM VLMAEVRRCR R

Sequence ? help Back to Top

Protein Sequence Length: 621 aa Download sequence

MTDYRFSTMN LWTDENASAM DAFTNSDLSS YWAPSAASSQ SLHHPPPTQS SASTTTPPSV  60
PSKSIAVLNQ ETLQQRLQAL IDGARESWTY AIFWQSSYDY SGGSVLGWGD GYYKGEENKG  120
RGKTKMVSSA AEQAHRKKVL RELNSLISGS ATGLDDVVDE EVTDTEWFFL VSMTQSFVNG  180
VGLPSQALLS SRPIWISGAD RLSASGCDRA RQGRIFGLQT MVCIPLPNGV VEMGSTEAIY  240
ITTDLMNKVK TLFNFNNLET GSWQSGTTGV TVADEGENDP SSLWISEPSN TIEMKDSITT  300
TVLSGGASAK PIHSENPSSS SLTENASRKQ TPSLNFPDYA AAAAPTNPSF KSESGGMLSF  360
GNKSLFSGNS QNETKKSPTS RRSTDEGILC FTTDAILPFF GKVKSGDSDH SDPEASAIPE  420
VDSCIKPSEP EKRPRKRGRK PANGREEPLN HVEAERQRRE KLNQKFYALR AVVPNVSKMD  480
KASLLGDAVS YINELKLKLE MAESKKTEIE KQLEFMKKNG GTGRKDTGNY TNTVNEDLKM  540
EIQVKIMGSD AMIRVECSKK NHPAARLMAA LKDLDLEMIH ASVSVVNDLM IQQAAVKMES  600
RVYTTEQLKM VLMAEVRRCR R

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	432	440	KRPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32640.1	1e-179	bHLH family protein