PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022950177.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family HD-ZIP
Protein Properties Length: 720aa    MW: 79565.2 Da    PI: 6.2996
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022950177.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.37.2e-2060115156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +r+  ++t++q++e+e++F+++++p+ ++r +L+++lgL+  qVk+WFqN+R+++k
  XP_022950177.1  60 KRRYNRHTHHQIQEMEAFFKECPHPDDKQRMDLSRELGLEPLQVKFWFQNKRTQMK 115
                     688899***********************************************998 PP
2START1816.6e-572404602206
                     HHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS
           START   2 laeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 
                     la + ++el ++a+a+ep+Wv          +n+ e+l+ f  ++v      +++ea+r+s++v+m++ +lv +l+d   qW++ +     +a+t
  XP_022950177.1 240 LAVSGMEELSRMAQAGEPLWVPADtksseVVLNEAEYLSCF-GGRVgpkplgFRTEASRVSAIVFMNHIKLVDILMDAT-QWSTVFCgivsRAST 332
                     5677799*************977655556788899999999.33448********************************.******99999**** PP

                     EEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE- CS
           START  82 levissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwveh 169
                     +ev+s+g      gal+lm+ae+q++splvp R+ +fvRy++q+g+g+w+++dvS+d  ++ +    + R +++pSg+li++++ng+sk+twveh
  XP_022950177.1 333 VEVLSPGlpgnfnGALYLMSAEFQVPSPLVPtRENYFVRYCKQQGDGVWAVADVSLDTLRPCS----MPRTRRRPSGCLIQQLPNGYSKITWVEH 423
                     ***********************************************************9976....89999*********************** PP

                     EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 170 vdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     v+ ++  ++ ++r+l +sgla+gak+wvatl+rq e+
  XP_022950177.1 424 VEADETGVPTMYRPLFNSGLAFGAKRWVATLDRQSER 460
                     *********************************9886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 720 aa     Download sequence    
MFDQDMFHAL HPHHHMFDMA FNTSENELED VRDDDFESKS GPEITFEPPC ESEHQQRAKK  60
RRYNRHTHHQ IQEMEAFFKE CPHPDDKQRM DLSRELGLEP LQVKFWFQNK RTQMKAQQER  120
HENAILKAEN EKLRAENTRY REAFAHSTCC PNCGSSATAL GEMSFDDQHL RIENSRLRDE  180
MERMSGYGLK STKSVPSSYY HLPSNAPQSS GFVGEMYGAC DFLRSISRPS EADKPIIVEL  240
AVSGMEELSR MAQAGEPLWV PADTKSSEVV LNEAEYLSCF GGRVGPKPLG FRTEASRVSA  300
IVFMNHIKLV DILMDATQWS TVFCGIVSRA STVEVLSPGL PGNFNGALYL MSAEFQVPSP  360
LVPTRENYFV RYCKQQGDGV WAVADVSLDT LRPCSMPRTR RRPSGCLIQQ LPNGYSKITW  420
VEHVEADETG VPTMYRPLFN SGLAFGAKRW VATLDRQSER FATSIATSIS TGDLRVISSI  480
EGRKSMLKLA ERMVTSFCAG VGASSVHAWT ALPIAAGDDV RVVTRKSTDE PGRPPGVVLS  540
AATSFWIPVP PKVVFDFLRK EKSRSEWDIL SNGGLVQEMA HIANGRHSGN CVSLLRVNSA  600
NSSQSNMLIL QESCTDCTGS YVIYAPVDTV AMNVVLSGCD PDYVALLPSG FAILPDGPAG  660
ANGGEILELG SGGSLITVAF QILVDSVPTA RLSIGSVATV NSLIKCTVER IRAAVMRENP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04890.10.0HD-ZIP family protein