PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022950460.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

bHLH

Protein Properties

Length: 349aa MW: 38295 Da PI: 5.4464

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022950460.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	45.2	1.7e-14	174	220	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+++ ++f L l+P++ kK++Ka+iL A+ YIk+Lq XP_022950460.1 174 DHVIAERKRREKLSQRFVALSALIPHL-----KKMDKASILGDAITYIKDLQ 220 6999*********************.....9****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence
MEISSAKWLS DMDLESAFMD DFEMNPFECT LDELSFQTFS DESHTSHLDL ENSVQTPPPP 60 PAKQPRTSGS WNNSSTTRQI ASMAASSSSS HIISFGNSHS SSPPASNKLV GNNGNYSNVK 120 PKFEIGCEGN IDLSSVIPQG SYENNPNCSP KYDGVGMKRG ASAMNYRTAL VAQDHVIAER 180 KRREKLSQRF VALSALIPHL KKMDKASILG DAITYIKDLQ DRLKVADEEA AKSRVESVVF 240 VNRSEDVSAV VEDDSSEENS SSDRAIPEIE ARVSGKDVLL KIHGKKCKGC LSNILNHIEE 300 LNLTVLNSSA LPFGNFRIDI TIIAQMGDGF SMTVKELVQK LRQACLQFV

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence

MEISSAKWLS DMDLESAFMD DFEMNPFECT LDELSFQTFS DESHTSHLDL ENSVQTPPPP  60
PAKQPRTSGS WNNSSTTRQI ASMAASSSSS HIISFGNSHS SSPPASNKLV GNNGNYSNVK  120
PKFEIGCEGN IDLSSVIPQG SYENNPNCSP KYDGVGMKRG ASAMNYRTAL VAQDHVIAER  180
KRREKLSQRF VALSALIPHL KKMDKASILG DAITYIKDLQ DRLKVADEEA AKSRVESVVF  240
VNRSEDVSAV VEDDSSEENS SSDRAIPEIE ARVSGKDVLL KIHGKKCKGC LSNILNHIEE  300
LNLTVLNSSA LPFGNFRIDI TIIAQMGDGF SMTVKELVQK LRQACLQFV

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	179	184	ERKRRE
2	180	185	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22760.1	6e-48	bHLH family protein