PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022950490.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

HD-ZIP

Protein Properties

Length: 218aa MW: 25726 Da PI: 8.3815

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022950490.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.6	2.5e-19	62	115	4	57
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++++++eq++ Le F +++++ +e++ +LA++lgL+ +qV +WFqNrRa++k+ XP_022950490.1 62 KRKLSSEQVKLLEMNFGNEHKLETERKNRLASELGLDPSQVAIWFQNRRARWKN 115 56899***********************************************95 PP
2	HD-ZIP_I/II	114.2	8e-37	61	152	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 kkr+ls+eqvklLE++F +e+kLe+erK++la+eLgl+p qva+WFqnrRAR+k+++lE++y++Lk+a+d+ + ++++L++e e+L+e+l+e XP_022950490.1 61 KKRKLSSEQVKLLEMNFGNEHKLETERKNRLASELGLDPSQVAIWFQNRRARWKNQKLEHQYSMLKKAHDSAVLQKTHLQSEIEKLKEQLAE 152 9****************************************************************************************986 PP

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence
MAAVNLRPDD DNSTLISHLY NPEIYTQMLP QQGTAEGNKP TKRRRRRSRA KEVAEAAAGL 60 KKRKLSSEQV KLLEMNFGNE HKLETERKNR LASELGLDPS QVAIWFQNRR ARWKNQKLEH 120 QYSMLKKAHD SAVLQKTHLQ SEIEKLKEQL AEAKNEIQKL VEVSERNRRW SVTMDDVQAA 180 ACWGEILMEE YEDVFYSMQE NNYNEPVEWY LNYMYTNY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	42	47	KRRRRR
2	42	63	KRRRRRSRAKEVAEAAAGLKKR
3	42	64	KRRRRRSRAKEVAEAAAGLKKRK
4	43	64	KRRRRRSRAKEVAEAAAGLKKR
5	43	65	KRRRRRSRAKEVAEAAAGLKKRK
6	44	65	KRRRRRSRAKEVAEAAAGLKKR
7	44	66	KRRRRRSRAKEVAEAAAGLKKRK
8	45	66	KRRRRRSRAKEVAEAAAGLKKR
9	45	67	KRRRRRSRAKEVAEAAAGLKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	1e-52	HD-ZIP family protein