PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_022950636.1
Organism
Cucurbita moschata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita
Family MIKC_MADS
Protein Properties Length: 225aa    MW: 25809.8 Da    PI: 9.7577
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_022950636.1genomeNCBIView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.52.6e-261059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    ri+n+  rqvtfskRr+g++KKA+ELS+LCdae a+iifss+gk ye++s
  XP_022950636.1 10 RIDNSASRQVTFSKRRKGLIKKAKELSILCDAELALIIFSSSGKQYEFAS 59
                    8***********************************************86 PP
2K-box74.23.7e-25851701398
           K-box  13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                     + + +q+e++ L++++ nLq+++R+l+Ge+L  Ls+k+L++Le+qLe sl++iR kK+++l ++i+el +k   ++++n +L +k+
  XP_022950636.1  85 DVKLWQKEVSALRQQLLNLQENNRKLMGEQLYGLSIKDLNSLESQLEFSLQSIRIKKEQILNDEIKELNRKGILMHQQNVELANKV 170
                     5678******************************************************************************9997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    
MGRGKIVIRR IDNSASRQVT FSKRRKGLIK KAKELSILCD AELALIIFSS SGKQYEFAST  60
SIESVIEKYN RRKEEDELLL NPISDVKLWQ KEVSALRQQL LNLQENNRKL MGEQLYGLSI  120
KDLNSLESQL EFSLQSIRIK KEQILNDEIK ELNRKGILMH QQNVELANKV NLFCQENIEL  180
HRKVYGHDSR LEMSVATGNP LIPYAIGGDA GLRVPIHLQL SPREQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.15e-70MIKC_MADS family protein