PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022950928.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

GRF

Protein Properties

Length: 569aa MW: 61869.9 Da PI: 8.2287

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022950928.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	76.6	2.5e-24	219	263	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e+ XP_022950928.1 219 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHINRGRHRSRKPVES 263 79****************************************986 PP
2	QLQ	54	5.2e-19	150	186	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT +Q+ +L++Q+l+yKyL++n+P+P++Ll +++k XP_022950928.1 150 GPFTQSQWVELEHQALIYKYLSSNVPLPSNLLIPLKK 186 59*******************************9975 PP

Sequence ? help Back to Top
Protein Sequence Length: 569 aa Download sequence
MDFGVVGLDG FVDSGDAPSP HSKLKSHGSC FSKQDRSGFV DDDWRNSKIP KTEPISGSKT 60 MPLHQGFPLL RSNTFISSSD GRQKEHMLSF SSLKSETSLL PKHSDLIARN LQNSIFPHNQ 120 HKSSVYSRNT GCVSGSYNGS MHGGIAGIRG PFTQSQWVEL EHQALIYKYL SSNVPLPSNL 180 LIPLKKSLYP YGFTCSSAGS MPPNSRWGSF HLGFSGNTDP EPGRCRRTDG KKWRCSRDAV 240 ADQKYCERHI NRGRHRSRKP VESQTGHSAP GTTNPTPMVT SISTSLSSTV VPSGGASNNL 300 PVIPHQLKSL HPVAASDPGA DAPGNRLLNR ETVCSRIQET GGLSMMSSNV NLMASNEKCG 360 AKQEISVGDE FGLVSTDSLL NPSQQRGSYA NPKNYDSFLI FSDQETQDHD QHPLRQFFED 420 WPKDQSSRSV MTWPEEFKSD WTQLSMSIPM SDFSSSSSSP THEKLAQSPP LRLSRELEPI 480 QMNLGARKND DELVQKQSNN QIAAAAMCWG SSMGGPLGEA LTNGSNCVKG SKVPPSLNLL 540 GEGWDGSQLG SSPTGVLQKA TFCSLSNSS

Sequence ? help Back to Top

Protein Sequence Length: 569 aa Download sequence

MDFGVVGLDG FVDSGDAPSP HSKLKSHGSC FSKQDRSGFV DDDWRNSKIP KTEPISGSKT  60
MPLHQGFPLL RSNTFISSSD GRQKEHMLSF SSLKSETSLL PKHSDLIARN LQNSIFPHNQ  120
HKSSVYSRNT GCVSGSYNGS MHGGIAGIRG PFTQSQWVEL EHQALIYKYL SSNVPLPSNL  180
LIPLKKSLYP YGFTCSSAGS MPPNSRWGSF HLGFSGNTDP EPGRCRRTDG KKWRCSRDAV  240
ADQKYCERHI NRGRHRSRKP VESQTGHSAP GTTNPTPMVT SISTSLSSTV VPSGGASNNL  300
PVIPHQLKSL HPVAASDPGA DAPGNRLLNR ETVCSRIQET GGLSMMSSNV NLMASNEKCG  360
AKQEISVGDE FGLVSTDSLL NPSQQRGSYA NPKNYDSFLI FSDQETQDHD QHPLRQFFED  420
WPKDQSSRSV MTWPEEFKSD WTQLSMSIPM SDFSSSSSSP THEKLAQSPP LRLSRELEPI  480
QMNLGARKND DELVQKQSNN QIAAAAMCWG SSMGGPLGEA LTNGSNCVKG SKVPPSLNLL  540
GEGWDGSQLG SSPTGVLQKA TFCSLSNSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	1e-92	GRF family protein