PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022951029.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

GRF

Protein Properties

Length: 613aa MW: 65543.5 Da PI: 9.1881

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022951029.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.1	1.8e-24	217	261	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e XP_022951029.1 217 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEG 261 79****************************************985 PP
2	QLQ	57.2	5.2e-20	148	183	2	37
QLQ 2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 +FT++Q+++L++Q+l+yKy+ an+ vP++Ll +i+k XP_022951029.1 148 PFTPSQWMELEHQALIYKYITANVHVPSNLLIPIRK 183 9*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 613 aa Download sequence
MDFGAVGFDG LVVGSSDISG FSSDPEMKQK WYDSASVSGF LHKQERSGSG GVAEMEDLRV 60 SKLPKTSASS LLRSNSPFFV SDSNQNHHQM LCFSSPKAEP SRLDKTASLS AASANFVRSS 120 APRNAGGSYG GLNGGSMHGG GFIGVRAPFT PSQWMELEHQ ALIYKYITAN VHVPSNLLIP 180 IRKALESAGI PTFSGGFLRP TAVGWGAFNV GFSNNSDPEP GRCRRTDGKK WRCSRDAVAD 240 QKYCERHMNR GRHRSRKPVE GQAGHSHSVA GASNITTAAT TTTASKLISS SPPSMTAVPS 300 NASPNTISCA GTHHFKNLNR GGSHPPPSSA TAPQINRMLI TNKENGGVGL HDSSSMNMKQ 360 FKQLPFAIHK QNPFEESPRT EFTSVSSNFL LNPSQKASSL MTYRAFNPSE GLTTSQPAAE 420 TQHSLNWPKN QSDSSSVSWS NWNPDLQSDR TQLSISIPMA TSDFRSSTSS PVHEKLTLSP 480 LRSLQEFDPI QMGLGVGNNV MDEANNRQAN WIPISWESSM GGPLGEVLHS TNNNSGESKN 540 SSILNLMTEG WDISSSPTGV LQKTVFGSFS NSSTGSSPRT DNNKTHEVGG GGSQCSDRLG 600 STFVNSSSSL PSG

Sequence ? help Back to Top

Protein Sequence Length: 613 aa Download sequence

MDFGAVGFDG LVVGSSDISG FSSDPEMKQK WYDSASVSGF LHKQERSGSG GVAEMEDLRV  60
SKLPKTSASS LLRSNSPFFV SDSNQNHHQM LCFSSPKAEP SRLDKTASLS AASANFVRSS  120
APRNAGGSYG GLNGGSMHGG GFIGVRAPFT PSQWMELEHQ ALIYKYITAN VHVPSNLLIP  180
IRKALESAGI PTFSGGFLRP TAVGWGAFNV GFSNNSDPEP GRCRRTDGKK WRCSRDAVAD  240
QKYCERHMNR GRHRSRKPVE GQAGHSHSVA GASNITTAAT TTTASKLISS SPPSMTAVPS  300
NASPNTISCA GTHHFKNLNR GGSHPPPSSA TAPQINRMLI TNKENGGVGL HDSSSMNMKQ  360
FKQLPFAIHK QNPFEESPRT EFTSVSSNFL LNPSQKASSL MTYRAFNPSE GLTTSQPAAE  420
TQHSLNWPKN QSDSSSVSWS NWNPDLQSDR TQLSISIPMA TSDFRSSTSS PVHEKLTLSP  480
LRSLQEFDPI QMGLGVGNNV MDEANNRQAN WIPISWESSM GGPLGEVLHS TNNNSGESKN  540
SSILNLMTEG WDISSSPTGV LQKTVFGSFS NSSTGSSPRT DNNKTHEVGG GGSQCSDRLG  600
STFVNSSSSL PSG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	1e-81	GRF family protein