PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022951351.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

MIKC_MADS

Protein Properties

Length: 242aa MW: 27502.6 Da PI: 10.7399

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022951351.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	87.2	9.1e-28	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n + rqvtfskRr g++KKAeELSvLCdaeva+++fs tgkl+e+ss XP_022951351.1 9 KKISNLTARQVTFSKRRRGLFKKAEELSVLCDAEVALLVFSATGKLFEFSS 59 68***********************************************96 PP
2	K-box	43.1	1.8e-15	89	156	17	84
K-box 17 lqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 + +a+L ke + + +R++ GedL+ L+l++L+qLe Le +l ++ ++K++ ++++i+ l k XP_022951351.1 89 ENSSHARLTKEAADMSHRLRQMRGEDLQGLNLEDLKQLEGVLEVGLARVIQTKERKIMNEINALELKT 156 566789********************************************************998775 PP

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence
MAREKIKIKK ISNLTARQVT FSKRRRGLFK KAEELSVLCD AEVALLVFSA TGKLFEFSSS 60 SVKDVITRYN LHSTNLGELE DPSLDLQLEN SSHARLTKEA ADMSHRLRQM RGEDLQGLNL 120 EDLKQLEGVL EVGLARVIQT KERKIMNEIN ALELKTYSTS LIYTGSQIDG REQDAESADD 180 KVVESKKATA GSFRRSGAGR RSFVGLRRKC VQLQQRPSRR RRQLRYLSQT RACMPKLRTK 240 LS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	207	222	RRKCVQLQQRPSRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22540.1	4e-75	MIKC_MADS family protein