PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022951564.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

ARF

Protein Properties

Length: 493aa MW: 54270.4 Da PI: 7.6116

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022951564.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	69.3	5e-22	49	150	1	99
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 f k+lt+sd+++ g +++p+ +a++ ++ + l+++d +g +W++++iyr++++r++lt+GW++Fv+ ++L +gD+vvF ++ XP_022951564.1 49 FAKILTSSDANNGGGFSVPRCCADSVfpplnyqADPPVQ--NLSITDVHGVVWNFRHIYRGTPRRHLLTTGWSKFVNHKKLIAGDSVVFA--KNL 139 89*******************999996555555..69999****************************************..678 PP EE..EEEEE-S CS B3 89 efelvvkvfrk 99 ++ ++v+++r+ XP_022951564.1 140 RGDMFVGIRRA 150 8889**997 PP
2	Auxin_resp	81.9	1.4e-27	206	288	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aa+ a++ ++Fe vY+Pra++seFvv+vekv+++ + ++ G+R+kma+ete s+ + ++Gtv++ s + W +S+Wr+L+ XP_022951564.1 206 AAELAAQFKPFELVYYPRAGRSEFVVQVEKVNESKNYQWYSGTRVKMAMETEYSKMTWYQGTVTSASVPEHGPWMGSPWRMLE 288 67889999********************************************99999********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 493 aa Download sequence
MDRQLWQAFA VCIKLNLHPI RPGRDESVVV SRFGRCDDNG GERDKIESFA KILTSSDANN 60 GGGFSVPRCC ADSVFPPLNY QADPPVQNLS ITDVHGVVWN FRHIYRGTPR RHLLTTGWSK 120 FVNHKKLIAG DSVVFAKNLR GDMFVGIRRA STSITRAIAG GDCGRWNSQN GGARCSLEEN 180 CSGDGGTKVF SRRNIGKLPA EAVANAAELA AQFKPFELVY YPRAGRSEFV VQVEKVNESK 240 NYQWYSGTRV KMAMETEYSK MTWYQGTVTS ASVPEHGPWM GSPWRMLEVT WDEIDTLQSA 300 KYVSPWEVEL ATPTPPIQPP LHPAKKFRGL PKSGMLNGEA ELFSPLMNFV DSTMEQFNPS 360 LLNLNSFPAG MQGARQKLFC ESRLFNPCKE MTPLTCDESS MSELNAAKKM QMVSTDLLIG 420 SVQFDTLSPD SQASVLSFAT GTAENQNCCN SAKAGVNSIQ LFGQVIYMNP PVENGLENGV 480 STNDGGKNPN QSA

Sequence ? help Back to Top

Protein Sequence Length: 493 aa Download sequence

MDRQLWQAFA VCIKLNLHPI RPGRDESVVV SRFGRCDDNG GERDKIESFA KILTSSDANN  60
GGGFSVPRCC ADSVFPPLNY QADPPVQNLS ITDVHGVVWN FRHIYRGTPR RHLLTTGWSK  120
FVNHKKLIAG DSVVFAKNLR GDMFVGIRRA STSITRAIAG GDCGRWNSQN GGARCSLEEN  180
CSGDGGTKVF SRRNIGKLPA EAVANAAELA AQFKPFELVY YPRAGRSEFV VQVEKVNESK  240
NYQWYSGTRV KMAMETEYSK MTWYQGTVTS ASVPEHGPWM GSPWRMLEVT WDEIDTLQSA  300
KYVSPWEVEL ATPTPPIQPP LHPAKKFRGL PKSGMLNGEA ELFSPLMNFV DSTMEQFNPS  360
LLNLNSFPAG MQGARQKLFC ESRLFNPCKE MTPLTCDESS MSELNAAKKM QMVSTDLLIG  420
SVQFDTLSPD SQASVLSFAT GTAENQNCCN SAKAGVNSIQ LFGQVIYMNP PVENGLENGV  480
STNDGGKNPN QSA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77850.1	1e-119	ARF family protein