PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022951762.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

HD-ZIP

Protein Properties

Length: 280aa MW: 31406.2 Da PI: 8.4983

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022951762.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	54.8	1.6e-17	127	181	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq +Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k XP_022951762.1 127 RKKLRLSKEQSLVLEETFKEHNTLNPKQKLALAKRLSLRPRQVEVWFQNRRARTK 181 788899***********************************************98 PP
2	HD-ZIP_I/II	125	3.5e-40	127	216	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlskeq+ +LEe+F+e+++L+p++K +la++L l+prqv+vWFqnrRARtk+kq+E+d+e+L+r++++l+een+rL+kev+eLr +l XP_022951762.1 127 RKKLRLSKEQSLVLEETFKEHNTLNPKQKLALAKRLSLRPRQVEVWFQNRRARTKLKQTEVDCEYLRRCCENLTEENRRLQKEVQELR-AL 216 69*************************************************************************************9.55 PP

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence
MSGSDDELCL SLSLGFGVTT QPSFIHRPSN SMINHLRRSS WKDAFQVSDR NVDSRSFLRG 60 IDVNRLRTAV DGEEENGVSS PNSTVSSISG KRSEREAVGD EAEAERTSCS RGSDDEDGGD 120 GDGDASRKKL RLSKEQSLVL EETFKEHNTL NPKQKLALAK RLSLRPRQVE VWFQNRRART 180 KLKQTEVDCE YLRRCCENLT EENRRLQKEV QELRALKLSP QLYMHMNPPT TLTMCPQCER 240 VAVSSFSSTS AASTRHPVAA GMQQRPSMPI APQAVLPIQR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	126	132	SRKKLRL
2	176	184	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60390.1	6e-86	HD-ZIP family protein