PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022951927.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

bHLH

Protein Properties

Length: 377aa MW: 41186.7 Da PI: 5.2382

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022951927.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	50.9	2.7e-16	197	243	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn+ E+rRR+riN+++ L+ l+P++ K +Ka++L +A+eY+k+Lq XP_022951927.1 197 VHNMSEKRRRRRINEKMKALQNLIPNS-----NKTDKASMLDEAIEYLKQLQ 243 6***********************7.....5****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 377 aa Download sequence
MADLYGTSPS SDVVGLPHDP ENFSSFINQH LQTTTSSASS PSCVSFKNKF MPFLHSQPPW 60 HSSSLFSRRR EESTSVAGVS CMLDFPESRF QLSRVLNHAQ LDSRFGDASY LGVNSTCAAV 120 KLSDPGDFVK ESSDNNVFSS SGAVDSDTNA PFKRRGLSSE NDLGDFSCDS EGADVPEAPS 180 STDLPRSSSK RSRSAEVHNM SEKRRRRRIN EKMKALQNLI PNSNKTDKAS MLDEAIEYLK 240 QLQLQVQMLS MRNGSSLQPM CLPGMLQPMQ LPQMGLDFDV GNAFLASRRG IDALSPGNEG 300 CPMQSTFNLS NKCNLSDQSL AIPSVPNITT SETTFGFESA IQAYDGQFDL SSNFKEAQPA 360 TQLDCYAQTR KDSANAS

Sequence ? help Back to Top

Protein Sequence Length: 377 aa Download sequence

MADLYGTSPS SDVVGLPHDP ENFSSFINQH LQTTTSSASS PSCVSFKNKF MPFLHSQPPW  60
HSSSLFSRRR EESTSVAGVS CMLDFPESRF QLSRVLNHAQ LDSRFGDASY LGVNSTCAAV  120
KLSDPGDFVK ESSDNNVFSS SGAVDSDTNA PFKRRGLSSE NDLGDFSCDS EGADVPEAPS  180
STDLPRSSSK RSRSAEVHNM SEKRRRRRIN EKMKALQNLI PNSNKTDKAS MLDEAIEYLK  240
QLQLQVQMLS MRNGSSLQPM CLPGMLQPMQ LPQMGLDFDV GNAFLASRRG IDALSPGNEG  300
CPMQSTFNLS NKCNLSDQSL AIPSVPNITT SETTFGFESA IQAYDGQFDL SSNFKEAQPA  360
TQLDCYAQTR KDSANAS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	203	208	KRRRRR
2	203	209	KRRRRRI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36930.1	9e-40	bHLH family protein