PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022952643.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

MYB_related

Protein Properties

Length: 737aa MW: 82721.3 Da PI: 4.5473

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022952643.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	30.7	7.1e-10	584	625	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +W++ + e++++av+q+G++ + I + ++ g+t+ q+k+++ + XP_022952643.1 584 KWSKHDTERFYEAVRQFGTD-FCMIQQLFP-GKTRHQIKLKFKN 625 8*****************.*****.********987 PP

Sequence ? help Back to Top
Protein Sequence Length: 737 aa Download sequence
MDPFDDILSD PSVSSRTGSR FQPKIKPRPK KPTLAPQSCT HSQDKKETVS DAKSCHDGRG 60 NTKSIQSSSQ LPVIEENKES EDDLLLATAR SDFISSHPPS VESAKAVDSM QLDFDSCGSI 120 LPSGSTTDDP VGVKKLTDTK NTGILNYSTP SSSTAHEATV LDQSGLGSIQ TEDRHFSDGK 180 IPEENIDIFY ELEYLDDFHN QPKNEADPAS LNQATISSED GDLDKQRLEI EERGAGADIT 240 MDTISSGDTS PSEQPACKYT TKPKIRTAEE DACMEISQPE ISNMLPPSPQ VISHDTRCMH 300 ETSIGSDFDG ILNDSSINFD GYTPANQHTE TPVNVEPLAF DSYDDILVDD FNLDDQDPSR 360 EVSGKTGEGK PSMESNISQP QEMFSQVGEE IEQSKTSRKS RKKVSHQPDE PEDGVDENRN 420 FPNETSKAGT SRGKKASKKS SKPSSDSEKP ARKRKQANKS VPDMQAEKRP KKFSHSTRRN 480 RRQVNKVLLE TPEDEIDFQK ISFRDLIIYH EYKEKLEKKE ASMRKSATNQ RTDTAGEEIF 540 NDGEESLASE QGRGTDDEET PDVVDMTSAY FNYHSFMDKT PRIKWSKHDT ERFYEAVRQF 600 GTDFCMIQQL FPGKTRHQIK LKFKNEERHH PFRLSDAVTK RATDHTQFLS LIGQLKEAAN 660 KAKQESNQDE LTENTGDEEL PELSPETNEE VAKPEGEEVQ ETGKEECVGE IHSPLKADEN 720 ESDEDDPHRW DEYKFDF

Sequence ? help Back to Top

Protein Sequence Length: 737 aa Download sequence

MDPFDDILSD PSVSSRTGSR FQPKIKPRPK KPTLAPQSCT HSQDKKETVS DAKSCHDGRG  60
NTKSIQSSSQ LPVIEENKES EDDLLLATAR SDFISSHPPS VESAKAVDSM QLDFDSCGSI  120
LPSGSTTDDP VGVKKLTDTK NTGILNYSTP SSSTAHEATV LDQSGLGSIQ TEDRHFSDGK  180
IPEENIDIFY ELEYLDDFHN QPKNEADPAS LNQATISSED GDLDKQRLEI EERGAGADIT  240
MDTISSGDTS PSEQPACKYT TKPKIRTAEE DACMEISQPE ISNMLPPSPQ VISHDTRCMH  300
ETSIGSDFDG ILNDSSINFD GYTPANQHTE TPVNVEPLAF DSYDDILVDD FNLDDQDPSR  360
EVSGKTGEGK PSMESNISQP QEMFSQVGEE IEQSKTSRKS RKKVSHQPDE PEDGVDENRN  420
FPNETSKAGT SRGKKASKKS SKPSSDSEKP ARKRKQANKS VPDMQAEKRP KKFSHSTRRN  480
RRQVNKVLLE TPEDEIDFQK ISFRDLIIYH EYKEKLEKKE ASMRKSATNQ RTDTAGEEIF  540
NDGEESLASE QGRGTDDEET PDVVDMTSAY FNYHSFMDKT PRIKWSKHDT ERFYEAVRQF  600
GTDFCMIQQL FPGKTRHQIK LKFKNEERHH PFRLSDAVTK RATDHTQFLS LIGQLKEAAN  660
KAKQESNQDE LTENTGDEEL PELSPETNEE VAKPEGEEVQ ETGKEECVGE IHSPLKADEN  720
ESDEDDPHRW DEYKFDF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	398	442	RKSRKKVSHQPDEPEDGVDENRNFPNETSKAGTSRGKKASKKSSK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	1e-34	MYB_related family protein