PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022952807.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

ARR-B

Protein Properties

Length: 513aa MW: 57703.7 Da PI: 6.5063

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022952807.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	87.4	1.3e-27	277	330	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k +++W+peLH++Fv+aveqL G+++A+P++ilelm+vkgLt+++v+SHLQkYR+ XP_022952807.1 277 KSKVDWSPELHKKFVQAVEQL-GIDHAIPSKILELMQVKGLTRHNVASHLQKYRM 330 6799***************.******************************8 PP
2	Myb_DNA-binding	47.3	4.8e-15	280	329	2	48
SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 W++e+++++v+av+qlG + +++I + m+ kg+t+ ++ s++qky+ XP_022952807.1 280 VDWSPELHKKFVQAVEQLGIDhaIPSKILELMQvKGLTRHNVASHLQKYR 329 57***********************************************7 PP
3	Response_reg	26.6	2.9e-10	20	126	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl+ d + + ++ +r+ le+ +y +v +++d +eal + + +++ +l + + d e +k + ++ ++lpii+ ++ +++ +++ +G XP_022952807.1 20 VLLLDRDSSSASEIRSKLEEMEY-VVYSCTDEKEALSAILNTPgnFHVAILEVCARNYD--ESFKLLGTS-MDLPIIMTSDVHCLSTMMKCIALG 110 7888999999999********.***********777767****999976..677777554.48****************** PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a +fl Kp ++++l++ XP_022952807.1 111 AVEFLLKPLSEDKLRN 126 ***********987 PP

Sequence ? help Back to Top
Protein Sequence Length: 513 aa Download sequence
MVCTVDDLQE WKDFPKGLRV LLLDRDSSSA SEIRSKLEEM EYVVYSCTDE KEALSAILNT 60 PGNFHVAILE VCARNYDESF KLLGTSMDLP IIMTSDVHCL STMMKCIALG AVEFLLKPLS 120 EDKLRNIWQH VLHKAFSNTP KPDEHSEASL MQLQLENKDR NEVPEEMEML SWIQDIVWEP 180 PEGSEKSELN LGESWQGSWE SEHQMNCSME TDSREKDVYS KFVETATHDL VCEGPFQEGQ 240 PRLSGKNKSD VKSSASAAEH SIQGSDVNHS AGSKAKKSKV DWSPELHKKF VQAVEQLGID 300 HAIPSKILEL MQVKGLTRHN VASHLQKYRM QKKHIMHREE TPWRSHPRCT IQTNHLKPIM 360 AYPSYHPNCG ISPSAAFPTW RQTNALVRGP PGFCHWPRPG IHPWNSYAAG VQADAWGCPV 420 TLPSHAPYFA LPQHVLSASH NMHAVNKSYG MPQSSFDLQP DEEVVDKVVK EVMRKPCSPL 480 PLGLKPATER VLTELSMQGI SVIPPQINGS RPP

Sequence ? help Back to Top

Protein Sequence Length: 513 aa Download sequence

MVCTVDDLQE WKDFPKGLRV LLLDRDSSSA SEIRSKLEEM EYVVYSCTDE KEALSAILNT  60
PGNFHVAILE VCARNYDESF KLLGTSMDLP IIMTSDVHCL STMMKCIALG AVEFLLKPLS  120
EDKLRNIWQH VLHKAFSNTP KPDEHSEASL MQLQLENKDR NEVPEEMEML SWIQDIVWEP  180
PEGSEKSELN LGESWQGSWE SEHQMNCSME TDSREKDVYS KFVETATHDL VCEGPFQEGQ  240
PRLSGKNKSD VKSSASAAEH SIQGSDVNHS AGSKAKKSKV DWSPELHKKF VQAVEQLGID  300
HAIPSKILEL MQVKGLTRHN VASHLQKYRM QKKHIMHREE TPWRSHPRCT IQTNHLKPIM  360
AYPSYHPNCG ISPSAAFPTW RQTNALVRGP PGFCHWPRPG IHPWNSYAAG VQADAWGCPV  420
TLPSHAPYFA LPQHVLSASH NMHAVNKSYG MPQSSFDLQP DEEVVDKVVK EVMRKPCSPL  480
PLGLKPATER VLTELSMQGI SVIPPQINGS RPP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18020.3	1e-83	ARR-B family protein