PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022952808.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

ARR-B

Protein Properties

Length: 513aa MW: 57589.4 Da PI: 6.714

Description

ARR-B family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022952808.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	87.2	1.6e-27	277	330	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k +++W+peLH++Fv+aveqL G+++A+P++ilelm+v+gLt+++v+SHLQkYR+ XP_022952808.1 277 KSKVDWSPELHKKFVQAVEQL-GIDHAIPSKILELMQVEGLTRHNVASHLQKYRM 330 6799***************.******************************8 PP
2	Myb_DNA-binding	45.3	2e-14	280	329	2	48
SSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT.TTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg..tWktIartmg.kgRtlkqcksrwqkyl 48 W++e+++++v+av+qlG + +++I + m+ +g+t+ ++ s++qky+ XP_022952808.1 280 VDWSPELHKKFVQAVEQLGIDhaIPSKILELMQvEGLTRHNVASHLQKYR 329 57***********************************************7 PP
3	Response_reg	26.9	2.4e-10	20	126	1	109
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl+ d + + ++ +r+ le+ +y +v +++d ++al + + +++ +l + + d e +k + ++ +lpii+ ++ +++ +++ +G XP_022952808.1 20 VLLLDRDSSSASEIRSKLEEMEY-VVYSCTDEKAALSAILNTPgnFHVAILEVCARNYD--ESFKLLGTSR-DLPIIMTSDVHCLSTMMKCIALG 110 7888999999999********.***********777777****999976..6777775544.6***9999******* PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a +fl Kp ++++l++ XP_022952808.1 111 AVEFLLKPLSEDKLRN 126 ***********987 PP

Sequence ? help Back to Top
Protein Sequence Length: 513 aa Download sequence
MVCTVDDLQE WKDFPKGLRV LLLDRDSSSA SEIRSKLEEM EYVVYSCTDE KAALSAILNT 60 PGNFHVAILE VCARNYDESF KLLGTSRDLP IIMTSDVHCL STMMKCIALG AVEFLLKPLS 120 EDKLRNIWQH VIHKAFSNTP KPDEHSVASL MRLQLENKDK NEAQGDMEML SWIQDIVWEP 180 PEGSEESQLN LGASLQCSWE SGHQMNCSME TDCREKDGHS KFVETTTHDL VCEGPFQEGQ 240 PRLSGKNKSN VKSRSSASEH SIQGSDVNHS AGSKAKKSKV DWSPELHKKF VQAVEQLGID 300 HAIPSKILEL MQVEGLTRHN VASHLQKYRM QKKHIMHREE NPWWSHPRCT IQTNHLKPIM 360 AYPSYHPNCG ISPSAAFPTW RQTNALVWGP PGFCHWPRPG IQPWNSYAAG VEADAWGCPV 420 TLPSHAPYFA RPQHVLSASH NMHAVNKSYG MPQSSFDLQP DEEVVDKVVN EAMRKPFSPL 480 PLGLKPATER VLTELSMQGI SIVPPQINGS RPP

Sequence ? help Back to Top

Protein Sequence Length: 513 aa Download sequence

MVCTVDDLQE WKDFPKGLRV LLLDRDSSSA SEIRSKLEEM EYVVYSCTDE KAALSAILNT  60
PGNFHVAILE VCARNYDESF KLLGTSRDLP IIMTSDVHCL STMMKCIALG AVEFLLKPLS  120
EDKLRNIWQH VIHKAFSNTP KPDEHSVASL MRLQLENKDK NEAQGDMEML SWIQDIVWEP  180
PEGSEESQLN LGASLQCSWE SGHQMNCSME TDCREKDGHS KFVETTTHDL VCEGPFQEGQ  240
PRLSGKNKSN VKSRSSASEH SIQGSDVNHS AGSKAKKSKV DWSPELHKKF VQAVEQLGID  300
HAIPSKILEL MQVEGLTRHN VASHLQKYRM QKKHIMHREE NPWWSHPRCT IQTNHLKPIM  360
AYPSYHPNCG ISPSAAFPTW RQTNALVWGP PGFCHWPRPG IQPWNSYAAG VEADAWGCPV  420
TLPSHAPYFA RPQHVLSASH NMHAVNKSYG MPQSSFDLQP DEEVVDKVVN EAMRKPFSPL  480
PLGLKPATER VLTELSMQGI SIVPPQINGS RPP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G18020.3	1e-92	ARR-B family protein