PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022953115.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

bHLH

Protein Properties

Length: 445aa MW: 49121.6 Da PI: 8.9655

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022953115.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.7	5.5e-10	235	282	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq XP_022953115.1 235 SHSLAERARREKISERMKYLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 282 79***********************....999***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 445 aa Download sequence
MNRALPEMLQ CLNTAGDCPD NLSVLERQRG RLKFQQDQLL QQSCFNRVDY GGGFPPPGVV 60 PADHLTGFPG FMSGGGSGGG MSLVEIVMGA VKPDPGGLGG KFDPSLLLNA TAYELNSSLS 120 RTSSCPPAVT PAVSAARRES FKKRKAEKVH TTTTTTTAAA APTNNKNKGD KNSKEKRIKT 180 SSEEEELSKN NNSSTTTNNN RETSADTSKE NSKASEVQKP GYIHVRAGRG QATDSHSLAE 240 RARREKISER MKYLQDLVPG CNKITGKAGM LDEIINYVQS LQRQVEFLSM KLSTVNPRLE 300 FNVDDLFTKE VFPQAIGEMS SEMTDPSSYL QFNPNNQQVV SCSGLEIGIN TSDIALRRSF 360 PENFVDSSCL TVSSQILFPS ILRHFRFSSN RFKFLIISIN RCSNFKPLRD GTWICRICTM 420 WVSIKADHQT PFYLIHIQVP LKEVT

Sequence ? help Back to Top

Protein Sequence Length: 445 aa Download sequence

MNRALPEMLQ CLNTAGDCPD NLSVLERQRG RLKFQQDQLL QQSCFNRVDY GGGFPPPGVV  60
PADHLTGFPG FMSGGGSGGG MSLVEIVMGA VKPDPGGLGG KFDPSLLLNA TAYELNSSLS  120
RTSSCPPAVT PAVSAARRES FKKRKAEKVH TTTTTTTAAA APTNNKNKGD KNSKEKRIKT  180
SSEEEELSKN NNSSTTTNNN RETSADTSKE NSKASEVQKP GYIHVRAGRG QATDSHSLAE  240
RARREKISER MKYLQDLVPG CNKITGKAGM LDEIINYVQS LQRQVEFLSM KLSTVNPRLE  300
FNVDDLFTKE VFPQAIGEMS SEMTDPSSYL QFNPNNQQVV SCSGLEIGIN TSDIALRRSF  360
PENFVDSSCL TVSSQILFPS ILRHFRFSSN RFKFLIISIN RCSNFKPLRD GTWICRICTM  420
WVSIKADHQT PFYLIHIQVP LKEVT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	142	168	KKRKAEKVHTTTTTTTAAAAPTNNKNK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G34530.1	4e-51	bHLH family protein