PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022953123.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

bHLH

Protein Properties

Length: 569aa MW: 63674.1 Da PI: 4.6852

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022953123.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.1	2.7e-12	315	358	7	55
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +Er+RR+++N+++ +Lr l+Pk + K++Ka+iL A++++k+Lq XP_022953123.1 315 VAERKRRKKLNERLYNLRALVPKiS------KMDKASILGDAIDFVKELQ 358 68*******************66......****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 569 aa Download sequence
MQSLMERLRP LVGSKSWDYC VLWKLSQDQR CVEWMDCCCA GTENGQNGGE ELGFPVSQVI 60 PCRDTAYPHP RASSCDLLAQ LPCSVPLNSG VYIQTLLSNE PKWLLFSNAM DSTALDETAG 120 TRVLIPFPFG LVELFVAKHA SEDQHVIDFV TIQCSISVEQ EAIINSSNMD TSFSVDVNAT 180 NEIQSKPFVA DRNAVLKDPE IQFEAPGSAA PTLENANDSF LTDKQGNPYK FSAENEFQEV 240 DTMQGSLMNT SNIHVQLKEN SECKEQQGEE KDLVKHENGR SDSISDCSDQ IDDEDDAIAK 300 YRRRTGQGPQ SKNLVAERKR RKKLNERLYN LRALVPKISK MDKASILGDA IDFVKELQKQ 360 VKELQDELEE HTDDENGKTV VSGNNGNQNS VQLPEFLSQN DKAQNNYHMG VLGSGSVLKQ 420 NHQDTEGTNN DKTQQMEPQV EVAQIDGNEF FVKVFCENKR GGFMRLMEAL NALGLEVTNA 480 NVTSYRGLVS NVFKVGKKDS EMVQADDVRD SLLEITKYPC RGWAEIVKAP ECIGSRMEPN 540 PHPHPHQHQT QNPFQDKAII NSRLHLLND

Sequence ? help Back to Top

Protein Sequence Length: 569 aa Download sequence

MQSLMERLRP LVGSKSWDYC VLWKLSQDQR CVEWMDCCCA GTENGQNGGE ELGFPVSQVI  60
PCRDTAYPHP RASSCDLLAQ LPCSVPLNSG VYIQTLLSNE PKWLLFSNAM DSTALDETAG  120
TRVLIPFPFG LVELFVAKHA SEDQHVIDFV TIQCSISVEQ EAIINSSNMD TSFSVDVNAT  180
NEIQSKPFVA DRNAVLKDPE IQFEAPGSAA PTLENANDSF LTDKQGNPYK FSAENEFQEV  240
DTMQGSLMNT SNIHVQLKEN SECKEQQGEE KDLVKHENGR SDSISDCSDQ IDDEDDAIAK  300
YRRRTGQGPQ SKNLVAERKR RKKLNERLYN LRALVPKISK MDKASILGDA IDFVKELQKQ  360
VKELQDELEE HTDDENGKTV VSGNNGNQNS VQLPEFLSQN DKAQNNYHMG VLGSGSVLKQ  420
NHQDTEGTNN DKTQQMEPQV EVAQIDGNEF FVKVFCENKR GGFMRLMEAL NALGLEVTNA  480
NVTSYRGLVS NVFKVGKKDS EMVQADDVRD SLLEITKYPC RGWAEIVKAP ECIGSRMEPN  540
PHPHPHQHQT QNPFQDKAII NSRLHLLND

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	302	323	RRRTGQGPQSKNLVAERKRRKK
2	317	324	ERKRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	8e-57	bHLH family protein