PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022953236.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

SBP

Protein Properties

Length: 778aa MW: 86932.4 Da PI: 6.9996

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022953236.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	114.9	4.5e-36	131	207	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqv gCe+d+se+k yhrrh+vC +++a++v+++g+++r+CqqC++fh ls+fDe+krsCrr+L++hn+rrr+k XP_022953236.1 131 RCQVFGCEVDISELKGYHRRHRVCLRCANATAVAIDGETKRYCQQCGKFHLLSDFDEGKRSCRRKLERHNNRRRRKP 207 6************************************************************************9975 PP

Sequence ? help Back to Top
Protein Sequence Length: 778 aa Download sequence
MEHPPPSPRP EPLYGAAAEM DLQLPIADDS SAVLWDLGDL LDFAGDDQFS LPLEHDNLPS 60 DSSHPLEIPS ETLPSNSDRI RKRDPRLTCP NFLAGRVPCA CPEIDAMLEE EAAASGKKRA 120 RTARVAAGTA RCQVFGCEVD ISELKGYHRR HRVCLRCANA TAVAIDGETK RYCQQCGKFH 180 LLSDFDEGKR SCRRKLERHN NRRRRKPADS TVAMESDRAG MHLEDVSCDG DAGKDDIVFN 240 NQTVQKEVVH LESEDGMVTP TVCSAPDLQS NIESGLTFMA MGEAQVDAGK DNFKSLASSY 300 CDNKSTYSSM CPTGRISFKL YDWNPAEFPR RLRLQIFEWL ANMPVELEGY IRPGCVILTA 360 FVAMPKFMWI KLLEDPTTHV HNFVVARGRP LWGRGSLLVY LNNMIFCAVE GGSVMKIEMD 420 MQAPRLHYVH PTCFEAGKPM EFVACGSHLQ QPKFRSLVSF DGKYLAHVQS FVIPHCQKEG 480 DTKQSNHQVF KICIPHTEDD LFGPAFVEVE NQSGLSNFIP ILIGDSETCS EMKTIQERLD 540 MSLPVEATGS SHKYCEHSSL RQKVYSELVT DISWLLKKPS SEPLQCIMNS SQIQRFTRLL 600 KFLISIDSTV ILGRVLEHLK IVMGNVESNV AANGFSYPDL RYFEKYLDYA TVVLQLNLRR 660 DRVSRSFSKK KLASVDPGTG LKMESGESDH FRAASGSTST SSVETRPLLN EKLREKIMVQ 720 ENSRKSCGLL FSGTVFRRQT ALFAITFAAV CLGICAALVH SHKVGEFAVS IRRCVINT

Sequence ? help Back to Top

Protein Sequence Length: 778 aa Download sequence

MEHPPPSPRP EPLYGAAAEM DLQLPIADDS SAVLWDLGDL LDFAGDDQFS LPLEHDNLPS  60
DSSHPLEIPS ETLPSNSDRI RKRDPRLTCP NFLAGRVPCA CPEIDAMLEE EAAASGKKRA  120
RTARVAAGTA RCQVFGCEVD ISELKGYHRR HRVCLRCANA TAVAIDGETK RYCQQCGKFH  180
LLSDFDEGKR SCRRKLERHN NRRRRKPADS TVAMESDRAG MHLEDVSCDG DAGKDDIVFN  240
NQTVQKEVVH LESEDGMVTP TVCSAPDLQS NIESGLTFMA MGEAQVDAGK DNFKSLASSY  300
CDNKSTYSSM CPTGRISFKL YDWNPAEFPR RLRLQIFEWL ANMPVELEGY IRPGCVILTA  360
FVAMPKFMWI KLLEDPTTHV HNFVVARGRP LWGRGSLLVY LNNMIFCAVE GGSVMKIEMD  420
MQAPRLHYVH PTCFEAGKPM EFVACGSHLQ QPKFRSLVSF DGKYLAHVQS FVIPHCQKEG  480
DTKQSNHQVF KICIPHTEDD LFGPAFVEVE NQSGLSNFIP ILIGDSETCS EMKTIQERLD  540
MSLPVEATGS SHKYCEHSSL RQKVYSELVT DISWLLKKPS SEPLQCIMNS SQIQRFTRLL  600
KFLISIDSTV ILGRVLEHLK IVMGNVESNV AANGFSYPDL RYFEKYLDYA TVVLQLNLRR  660
DRVSRSFSKK KLASVDPGTG LKMESGESDH FRAASGSTST SSVETRPLLN EKLREKIMVQ  720
ENSRKSCGLL FSGTVFRRQT ALFAITFAAV CLGICAALVH SHKVGEFAVS IRRCVINT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	193	205	RRKLERHNNRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18830.2	0.0	SBP family protein