PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_022953290.1

Organism

Cucurbita moschata

Taxonomic ID

3662

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Cucurbiteae; Cucurbita

Family

C3H

Protein Properties

Length: 228aa MW: 25916.4 Da PI: 9.4731

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_022953290.1	genome	NCBI	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26.7	9.8e-09	57	78	4	25
---SGGGGTS--TTTTT-SS-S CS zf-CCCH 4 elCrffartGtCkyGdrCkFaH 25 + Cr f+r C yGd+C++ H XP_022953290.1 57 KVCRQFQRRRKCAYGDQCRYLH 78 68******************** PP
2	zf-CCCH	31.9	2.3e-10	138	161	2	25
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 kt+lC + tG C+yG+ C+FaH XP_022953290.1 138 KTRLCYPLQTTGSCSYGAVCRFAH 161 8*********************** PP

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence
MPSKSRIPPS NNRNIGYDHE LGCMSTPALN DTHRRLPSLR GIGFHEGQLS GRSNEMKVCR 60 QFQRRRKCAY GDQCRYLHEN PEKTRAFGSS TQNYEVRIVD SGHVMDRRRG LDQLEEVRSK 120 VQTEIVVRGE IPKPVRCKTR LCYPLQTTGS CSYGAVCRFA HEEAELQKLE PFIASQRGSV 180 SDASATTSAA TQAEIGTVCK NEEPRMKQFF KSKKSKRLIA IYADWLED

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19360.1	1e-16	C3H family protein